* using log directory ‘/home/hornik/tmp/CRAN_special_donttest/ReporterScore.Rcheck’
* using R Under development (unstable) (2026-02-19 r89439)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-15 (Debian 15.2.0-12) 15.2.0
    GNU Fortran (Debian 15.2.0-12) 15.2.0
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-20 13:54:27 UTC
* using option ‘--run-donttest’
* checking for file ‘ReporterScore/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ReporterScore’ version ‘0.2.5’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Chen Peng <bfzede@gmail.com>’

New maintainer:
  Chen Peng <bfzede@gmail.com>
Old maintainer(s):
  Chen Peng <pengchen2001@zju.edu.cn>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ReporterScore’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/16s] ERROR
Running examples in ‘ReporterScore-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: KO_gsva
> ### Title: Perform Gene Set Variation Analysis
> ### Aliases: KO_gsva
> 
> ### ** Examples
> 
> ## No test: 
> ## use `gsva` from the `GSVA` package.
> if (requireNamespace("GSVA")) {
+   data("reporter_score_res")
+   gsva_res <- KO_gsva(reporter_score_res, p.adjust.method = "none")
+ }
Loading required namespace: GSVA
=================================Checking group=================================

30 samples are matched for next step.
===========================Removing all-zero rows: 0============================

Error: unable to find an inherited method for function ‘gsva’ for signature ‘param = "matrix"’
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE