* installing *source* package ‘RcppTskit’ ...
** this is package ‘RcppTskit’ version ‘0.2.0’
** using staged installation
** libs
specified C++20
using C compiler: ‘Debian clang version 21.1.8 (3)’
using C++ compiler: ‘Debian clang version 21.1.8 (3)’
using C++20
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/convert.c -o tskit/convert.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/core.c -o tskit/core.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/genotypes.c -o tskit/genotypes.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/haplotype_matching.c -o tskit/haplotype_matching.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/kastore.c -o tskit/kastore.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/stats.c -o tskit/stats.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/tables.c -o tskit/tables.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O3 -Wall -pedantic -fpic -c tskit/trees.c -o tskit/trees.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O3 -Wall -pedantic -c tests_c.c -o tests_c.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O3 -Wall -pedantic   -c RcppTskit.cpp -o RcppTskit.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O3 -Wall -pedantic   -c tests.cpp -o tests.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RcppTskit.so tskit/convert.o tskit/core.o tskit/genotypes.o tskit/haplotype_matching.o tskit/kastore.o tskit/stats.o tskit/tables.o tskit/trees.o tests_c.o RcppTskit.o tests.o RcppExports.o -Wl,-soname,RcppTskit.so -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/RcppTskit.Rcheck/00LOCK-RcppTskit/00new/RcppTskit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppTskit)