downloading reverse dependencies ... downloading arcgisgeocode_0.3.0.tar.gz ... ok downloading arcgislayers_0.4.0.tar.gz ... ok downloading arcgisutils_0.3.3.tar.gz ... ok downloading CooRTweet_2.1.2.tar.gz ... ok downloading cyclestreets_1.0.3.tar.gz ... ok downloading ichimoku_1.5.6.tar.gz ... ok downloading kmeRtone_1.0.tar.gz ... ok downloading opentripplanner_0.5.2.tar.gz ... ok downloading osrm_4.2.0.tar.gz ... ok downloading robotoolbox_1.4.tar.gz ... ok downloading rTwig_1.4.0.tar.gz ... ok downloading simfinapi_1.0.1.tar.gz ... ok downloading td_0.0.6.tar.gz ... ok downloading geomander_2.5.0.tar.gz ... ok installing dependencies ‘arcgisbinding’, ‘arcgisutils’, ‘arcpbf’, ‘baf’, ‘censable’, ‘colourvalues’, ‘dataverse’, ‘mapiso’, ‘od’, ‘RcppSimdJson’, ‘redist’, ‘rmatio’, ‘seqLogo’, ‘stplanr’, ‘tidytable’, ‘tinytiger’, ‘venneuler’ Warning: package ‘arcgisbinding’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘censusapi’, ‘redistmetrics’ begin installing package ‘censusapi’ begin installing package ‘redistmetrics’ begin installing package ‘tidytable’ begin installing package ‘od’ begin installing package ‘venneuler’ begin installing package ‘seqLogo’ begin installing package ‘mapiso’ begin installing package ‘rmatio’ begin installing package ‘colourvalues’ begin installing package ‘baf’ begin installing package ‘dataverse’ begin installing package ‘tinytiger’ begin installing package ‘RcppSimdJson’ * installing *source* package ‘censusapi’ ... ** this is package ‘censusapi’ version ‘0.9.0’ ** package ‘censusapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censusapi) * installing *source* package ‘od’ ... ** this is package ‘od’ version ‘0.5.1’ ** package ‘od’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (od) begin installing package ‘stplanr’ * installing *source* package ‘venneuler’ ... ** this is package ‘venneuler’ version ‘1.1-4’ ** package ‘venneuler’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (venneuler) * installing *source* package ‘tinytiger’ ... ** this is package ‘tinytiger’ version ‘0.0.10’ ** package ‘tinytiger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytiger) begin installing package ‘censable’ * installing *source* package ‘seqLogo’ ... ** this is package ‘seqLogo’ version ‘1.74.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqLogo) * installing *source* package ‘baf’ ... ** this is package ‘baf’ version ‘0.0.3’ ** package ‘baf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baf) * installing *source* package ‘mapiso’ ... ** this is package ‘mapiso’ version ‘0.3.0’ ** package ‘mapiso’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapiso) * installing *source* package ‘dataverse’ ... ** this is package ‘dataverse’ version ‘0.3.15’ ** package ‘dataverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataverse) * installing *source* package ‘tidytable’ ... ** this is package ‘tidytable’ version ‘0.11.2’ ** package ‘tidytable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidytable) * installing *source* package ‘censable’ ... ** this is package ‘censable’ version ‘0.0.8’ ** package ‘censable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censable) * installing *source* package ‘stplanr’ ... ** this is package ‘stplanr’ version ‘1.2.3’ ** package ‘stplanr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stplanr) * installing *source* package ‘rmatio’ ... ** this is package ‘rmatio’ version ‘0.19.0’ ** package ‘rmatio’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking inttypes.h... yes checking stdlib.h... yes checking stdint.h... yes checking strings.h... yes checking string.h... yes checking sys/stat.h... yes checking sys/types.h... yes checking unistd.h... checking for zlib... yes checking size of char... 1 checking size of short... 2 checking size of double... 8 checking size of float... 4 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of size_t... 8 checking size of void *... 8 checking for mat_int8_t... int8_t checking for mat_int16_t... int16_t checking for mat_int32_t... int32_t checking for mat_int64_t... int64_t checking for mat_uint8_t... uint8_t checking for mat_uint16_t... uint16_t checking for mat_uint32_t... uint32_t checking for mat_uint64_t... uint64_t configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/matio/config.h config.status: src/matio/config.h is unchanged ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfV6Ccn/R.INSTALL16e0ac7e6fccef/rmatio/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/endian.c -o matio/endian.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/inflate.c -o matio/inflate.o matio/inflate.c: In function ‘InflateSkip’: matio/inflate.c:77:22: warning: storing the address of local variable ‘uncomp_buf’ in ‘*z.next_out’ [-Wdangling-pointer=] 77 | z->next_out = uncomp_buf; | ~~~~~~~~~~~~~^~~~~~~~~~~~ matio/inflate.c:51:31: note: ‘uncomp_buf’ declared here 51 | mat_uint8_t comp_buf[512],uncomp_buf[512]; | ^~~~~~~~~~ matio/inflate.c:49:35: note: ‘z’ declared here 49 | InflateSkip(mat_t *mat, z_streamp z, int nbytes) | ~~~~~~~~~~^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat4.c -o matio/mat4.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat5.c -o matio/mat5.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat.c -o matio/mat.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/matvar_cell.c -o matio/matvar_cell.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/matvar_struct.c -o matio/matvar_struct.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/read_data.c -o matio/read_data.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmatio.c -o rmatio.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -lz -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfV6Ccn/R.INSTALL16e0ac7e6fccef/rmatio/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rmatio/00new/rmatio/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmatio) * installing *source* package ‘colourvalues’ ... ** this is package ‘colourvalues’ version ‘0.3.9’ ** package ‘colourvalues’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLXJH9Y/R.INSTALL16e0a64af001bd/colourvalues/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ColourValues.cpp -o ColourValues.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConvertColours.cpp -o ConvertColours.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c alpha.cpp -o alpha.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c format.cpp -o format.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c list.cpp -o list.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c palette_utils.cpp -o palette_utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c palettes.cpp -o palettes.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scale.cpp -o scale.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o colourvalues.so ColourValues.o ConvertColours.o RcppExports.o alpha.o format.o list.o palette_utils.o palettes.o scale.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLXJH9Y/R.INSTALL16e0a64af001bd/colourvalues/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-colourvalues/00new/colourvalues/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colourvalues) * installing *source* package ‘redistmetrics’ ... ** this is package ‘redistmetrics’ version ‘1.0.9’ ** package ‘redistmetrics’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGe7Sr3/R.INSTALL16e0a3669eb571/redistmetrics/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from ../inst/include/redistmetrics_RcppExports.h:8, from ../inst/include/redistmetrics.h:7, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c compactness.cpp -o compactness.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c competitiveness.cpp -o competitiveness.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c contiguity.cpp -o contiguity.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c distances.cpp -o distances.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from distances.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c kirchhoff.cpp -o kirchhoff.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from kirchhoff.h:4, from kirchhoff.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ In file included from kirchhoff.cpp:2: ../inst/include/kirchhoff_inline.h: In function ‘double log_st_distr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: ../inst/include/kirchhoff_inline.h:25:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:25:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~^~~~~~~~~ ../inst/include/kirchhoff_inline.h:34:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:34:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~^~~~~~~~~ ../inst/include/kirchhoff_inline.h:43:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:43:62: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~^~~~~~~~~ ../inst/include/kirchhoff_inline.h: In function ‘double log_st_contr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: ../inst/include/kirchhoff_inline.h:70:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 70 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:85:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 85 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:93:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 93 | if (districts(nbor, idx) != district || pos.at(nbor) == cty) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ kirchhoff.cpp: In function ‘Rcpp::NumericVector n_removed(const Graph&, const arma::umat&, int)’: kirchhoff.cpp:43:36: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbors[j], n) != dist) removed += 1.0; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c partisan.cpp -o partisan.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c reindex.cpp -o reindex.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c segregation.cpp -o segregation.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from segregation.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c splits.cpp -o splits.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c tally.cpp -o tally.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c varinfo.cpp -o varinfo.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from varinfo.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o redistmetrics.so RcppExports.o compactness.o competitiveness.o contiguity.o distances.o kirchhoff.o partisan.o reindex.o segregation.o splits.o tally.o varinfo.o -latomic -lpthread -latomic -lpthread -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGe7Sr3/R.INSTALL16e0a3669eb571/redistmetrics/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redistmetrics/00new/redistmetrics/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redistmetrics) begin installing package ‘redist’ * installing *source* package ‘RcppSimdJson’ ... ** this is package ‘RcppSimdJson’ version ‘0.1.14’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBFSTE0/R.INSTALL16e0b0709dc162/RcppSimdJson/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSIMDJSON_NO_COMPUTED_GOTO -I../inst/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSIMDJSON_NO_COMPUTED_GOTO -I../inst/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c deserialize.cpp -o deserialize.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSIMDJSON_NO_COMPUTED_GOTO -I../inst/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exported-utils.cpp -o exported-utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSIMDJSON_NO_COMPUTED_GOTO -I../inst/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c internal-utils.cpp -o internal-utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSIMDJSON_NO_COMPUTED_GOTO -I../inst/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppsimdjson_utils_check.cpp -o rcppsimdjson_utils_check.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSIMDJSON_NO_COMPUTED_GOTO -I../inst/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c simdjson_example.cpp -o simdjson_example.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RcppSimdJson.so RcppExports.o deserialize.o exported-utils.o internal-utils.o rcppsimdjson_utils_check.o simdjson_example.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBFSTE0/R.INSTALL16e0b0709dc162/RcppSimdJson/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppSimdJson/00new/RcppSimdJson/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppSimdJson) begin installing package ‘arcgisutils’ * installing *source* package ‘arcgisutils’ ... ** this is package ‘arcgisutils’ version ‘0.3.3’ ** package ‘arcgisutils’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.86.0 (adf9b6ad1 2025-02-28) Using rustc 1.86.0 (05f9846f8 2025-03-31) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.94 Compiling unicode-ident v1.0.18 Compiling strsim v0.11.1 Compiling fnv v1.0.7 Compiling ident_case v1.0.1 Compiling serde v1.0.219 Compiling quote v1.0.40 Compiling syn v2.0.100 Compiling build-print v0.1.1 Compiling extendr-ffi v0.8.0 Compiling paste v1.0.15 Compiling serde_json v1.0.140 Compiling itoa v1.0.15 Compiling ryu v1.0.20 Compiling extendr-api v0.8.0 Compiling memchr v2.7.4 Compiling darling_core v0.20.11 Compiling serde_derive v1.0.219 Compiling darling_macro v0.20.11 Compiling darling v0.20.11 Compiling derive_builder_core v0.20.2 Compiling derive_builder_macro v0.20.2 Compiling serde_with_macros v3.12.0 Compiling derive_builder v0.20.2 Compiling extendr-macros v0.8.0 Compiling once_cell v1.21.3 Compiling serde_with v3.12.0 Compiling serde_esri v0.3.1 (https://github.com/josiahparry/serde_esri#28502b3a) note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Compiling arcgisutils v0.1.0 (/home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/rust) note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 44.29s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o arcgisutils.so entrypoint.o -L./rust/target/release -larcgisutils -L/home/hornik/tmp/R-d-gcc-15/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/.cargo /home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZl6GtU/R.INSTALL16eb5924af5906/arcgisutils/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-arcgisutils/00new/arcgisutils/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arcgisutils) begin installing package ‘arcpbf’ * installing *source* package ‘arcpbf’ ... ** this is package ‘arcpbf’ version ‘0.1.7’ ** package ‘arcpbf’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.86.0 (adf9b6ad1 2025-02-28) Using rustc 1.86.0 (05f9846f8 2025-03-31) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target warning: profiles for the non root package will be ignored, specify profiles at the workspace root: package: /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/rust/arcpbf/Cargo.toml workspace: /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/rust/Cargo.toml Compiling proc-macro2 v1.0.94 Compiling unicode-ident v1.0.18 Compiling anyhow v1.0.97 Compiling build-print v0.1.1 Compiling extendr-ffi v0.8.0 Compiling quote v1.0.40 Compiling syn v2.0.100 Compiling either v1.15.0 Compiling autocfg v1.4.0 Compiling num-traits v0.2.19 Compiling itertools v0.12.1 Compiling paste v1.0.15 Compiling extendr-api v0.8.0 Compiling bytes v1.10.1 Compiling prost-derive v0.12.6 Compiling extendr-macros v0.8.0 Compiling once_cell v1.21.3 Compiling iana-time-zone v0.1.63 Compiling prost v0.12.6 Compiling esripbf v0.1.0 (/home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/rust/esripbf) Compiling chrono v0.4.40 Compiling arcpbf v0.1.0 (/home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/rust/arcpbf) note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 22.54s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o arcpbf.so entrypoint.o -L./rust/target/release -larcpbf -L/home/hornik/tmp/R-d-gcc-15/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/.cargo /home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpA29BQI/R.INSTALL16eeeb735bf2be/arcpbf/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-arcpbf/00new/arcpbf/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arcpbf) * installing *source* package ‘redist’ ... ** this is package ‘redist’ version ‘4.3.0’ ** package ‘redist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE2Kj1u/R.INSTALL16ea501da4c174/redist/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from RcppExports.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c adj_reduce.cpp -o adj_reduce.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from tree_op.h:1, from adj_reduce.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c check_contiguity.cpp -o check_contiguity.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from check_contiguity.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c coarsen.cpp -o coarsen.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from coarsen.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c coloring.cpp -o coloring.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c compact_vectorized.cpp -o compact_vectorized.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from compact_vectorized.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c constraint_calc_helper.cpp -o constraint_calc_helper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from constraint_calc_helper.cpp:11: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ constraint_calc_helper.cpp: In function ‘arma::uvec getIn(arma::ivec, arma::ivec)’: constraint_calc_helper.cpp:107:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 107 | for(i = 0; i < vec1.n_elem; i++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 109 | for(j = 0; j < vec2.n_elem; j++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp: In function ‘arma::uvec get_in_index(arma::vec, arma::vec)’: constraint_calc_helper.cpp:125:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 125 | for(i = 0; i < vec1.n_elem; i++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp:127:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 127 | for(j = 0; j < vec2.n_elem; j++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp:124:22: warning: variable ‘match’ set but not used [-Wunused-but-set-variable] 124 | int i; int j; bool match; arma::uvec store_in(vec1.n_elem); | ^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c contiguity.cpp -o contiguity.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c cores.cpp -o cores.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from cores.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c crsg.cpp -o crsg.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from crsg.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_helpers.cpp -o distance_helpers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c kirchhoff.cpp -o kirchhoff.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from kirchhoff.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c make_swaps_helper.cpp -o make_swaps_helper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from make_swaps_helper.cpp:10: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ make_swaps_helper.cpp: In function ‘Rcpp::NumericVector distParity(Rcpp::NumericMatrix, Rcpp::NumericVector)’: make_swaps_helper.cpp:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 412 | for(int k = 0; k < assignments.size(); k++){ | ~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c map_calc.cpp -o map_calc.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from map_calc.h:4, from map_calc.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ map_calc.cpp: In function ‘double log_boundary(const Graph&, const arma::subview_col&, int, int)’: map_calc.cpp:16:26: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 16 | if (districts(i) != distr_root) continue; // same side of boundary as root | ~~~~~~~~~~~~~^~~~~~~~~~~~~ map_calc.cpp:18:33: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 18 | if (districts(nbor) != distr_other) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ map_calc.cpp: In function ‘double eval_sq_entropy(const arma::subview_col&, const arma::uvec&, int, const arma::uvec&, int, int, int)’: map_calc.cpp:38:28: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 38 | if (current[k] != j) continue; map_calc.cpp:41:30: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 41 | if (districts[k] == distr) | ~~~~~~~~~~~~~^~~~~~~~ map_calc.cpp: In function ‘double eval_inc(const arma::subview_col&, int, const arma::uvec&)’: map_calc.cpp:114:42: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 114 | if (districts[incumbents[i] - 1] == distr) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ map_calc.cpp: In function ‘double eval_polsby(const arma::subview_col&, int, const arma::ivec&, const arma::ivec&, const arma::vec&, const arma::vec&)’: map_calc.cpp:242:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 242 | for (int e = 0; e < idx.size(); e++) { | ~~^~~~~~~~~~~~ map_calc.cpp:246:41: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 246 | if (districts(from(idx(e))) != distr) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ map_calc.cpp: In function ‘double eval_fry_hold(const arma::subview_col&, int, const arma::uvec&, arma::mat, double)’: map_calc.cpp:264:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 264 | for (int i = 0; i < idxs.size() - 1; i++) { | ~~^~~~~~~~~~~~~~~~~ map_calc.cpp:265:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 265 | for (int k = i + 1; k < idxs.size(); k++) { | ~~^~~~~~~~~~~~~ map_calc.cpp: In function ‘double eval_grp_hinge(const arma::subview_col&, int, const arma::vec&, const arma::uvec&, const arma::uvec&)’: map_calc.cpp:71:43: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 71 | return std::sqrt(std::max(0.0, target - frac)); | ~~~~~~~^~~~~~ map_calc.cpp:60:12: note: ‘target’ was declared here 60 | double target; | ^~~~~~ map_calc.cpp: In function ‘double eval_grp_inv_hinge(const arma::subview_col&, int, const arma::vec&, const arma::uvec&, const arma::uvec&)’: map_calc.cpp:93:41: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 93 | return std::sqrt(std::max(0.0, frac - target)); | ~~~~~^~~~~~~~ map_calc.cpp:82:12: note: ‘target’ was declared here 82 | double target; | ^~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc_gibbs.cpp -o mcmc_gibbs.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from mcmc_gibbs.h:4, from mcmc_gibbs.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c merge_split.cpp -o merge_split.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from merge_split.h:4, from merge_split.cpp:9: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ In file included from merge_split.h:14: /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h: In function ‘double log_st_distr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:25:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:25:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~^~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:34:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:34:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~^~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:43:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:43:62: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~^~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h: In function ‘double log_st_contr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:70:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 70 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:85:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 85 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:93:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 93 | if (districts(nbor, idx) != district || pos.at(nbor) == cty) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ merge_split.cpp: In function ‘double split_map_ms(const Graph&, Tree&, const arma::uvec&, Multigraph&, arma::subview_col, int, int, std::vector&, std::vector&, const arma::uvec&, double, double, double, int)’: merge_split.cpp:186:26: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 186 | if (districts(i) == distr_1 || districts(i) == distr_2) { | ~~~~~~~~~~~~~^~~~~~~~~~ merge_split.cpp:186:53: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 186 | if (districts(i) == distr_1 || districts(i) == distr_2) { | ~~~~~~~~~~~~~^~~~~~~~~~ merge_split.cpp: In function ‘bool cut_districts_ms(Tree&, int, int, arma::subview_col&, int, int, const arma::uvec&, double, double, double, double)’: merge_split.cpp:230:26: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 230 | if (districts(i) != distr_root || i == root) continue; | ~~~~~~~~~~~~~^~~~~~~~~~~~~ merge_split.cpp: In function ‘void adapt_ms_parameters(const Graph&, int, int&, double, double, const arma::uvec&, const arma::uvec&, Multigraph&, const arma::uvec&, double)’: merge_split.cpp:299:25: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 299 | if (plan(j) == distr_1 || plan(j) == distr_2) { | ~~~~~~~~^~~~~~~~~~ merge_split.cpp:299:47: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 299 | if (plan(j) == distr_1 || plan(j) == distr_2) { | ~~~~~~~~^~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c pareto.cpp -o pareto.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from pareto.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c pop_helpers.cpp -o pop_helpers.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from pop_helpers.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from random.h:4, from random.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c renumber.cpp -o renumber.o In file included from renumber.cpp:4: hungarian.h: In member function ‘void HungarianAlgorithm::assignmentoptimal(int*, double*, double*, int, int)’: hungarian.h:169:21: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 169 | if (fabs(distMatrix[row + nOfRows*col]) < DBL_EPSILON) | ^~ hungarian.h:177:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 177 | for (row = 0; row&, int, const arma::uvec&, double, double, double, double)’: smc.cpp:528:30: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 528 | if (districts(i - 1) != distr_root || i - 1 == root) continue; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c smc_base.cpp -o smc_base.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from smc_base.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c splits.cpp -o splits.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from splits.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c sw_mh_alg.cpp -o sw_mh_alg.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from sw_mh_alg.cpp:10: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ sw_mh_alg.cpp: In function ‘Rcpp::List vector_to_list(arma::uvec)’: sw_mh_alg.cpp:26:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 26 | for(int i = 0; i < vecname.n_elem; i++) { | ~~^~~~~~~~~~~~~~~~ sw_mh_alg.cpp: In function ‘arma::uvec get_not_in(arma::uvec, arma::uvec)’: sw_mh_alg.cpp:35:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 35 | for(i = 0; i < vec1.n_elem; i++) { | ~~^~~~~~~~~~~~~ sw_mh_alg.cpp: In function ‘Rcpp::List swMH(Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector, int, Rcpp::List, double, double, Rcpp::NumericVector, Rcpp::NumericVector, int, double, std::string, int, int, int, int, int, int, int, bool)’: sw_mh_alg.cpp:365:37: warning: ‘start_anneal’ may be used uninitialized [-Wmaybe-uninitialized] 365 | if ((k >= start_anneal) & (k < start_cold)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sw_mh_alg.cpp:131:9: note: ‘start_anneal’ was declared here 131 | int start_anneal; | ^~~~~~~~~~~~ sw_mh_alg.cpp:365:37: warning: ‘start_cold’ may be used uninitialized [-Wmaybe-uninitialized] 365 | if ((k >= start_anneal) & (k < start_cold)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sw_mh_alg.cpp:132:9: note: ‘start_cold’ was declared here 132 | int start_cold; | ^~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c sw_mh_helper.cpp -o sw_mh_helper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from sw_mh_helper.h:12, from sw_mh_helper.cpp:10: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ sw_mh_helper.cpp: In function ‘Rcpp::NumericVector init_pop(Rcpp::NumericVector, arma::vec)’: sw_mh_helper.cpp:42:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 42 | for(j = 0; j < cd_i_ind.n_elem; j++){ | ~~^~~~~~~~~~~~~~~~~ sw_mh_helper.cpp: In function ‘int count_valid(Rcpp::List, Rcpp::List, Rcpp::NumericVector)’: sw_mh_helper.cpp:309:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 309 | for(j = 0; j < find_cds.n_elem; j++){ | ~~^~~~~~~~~~~~~~~~~ sw_mh_helper.cpp: In function ‘Rcpp::List changeBeta(arma::vec, double, double, Rcpp::NumericVector, int)’: sw_mh_helper.cpp:793:70: warning: ‘wj’ may be used uninitialized [-Wmaybe-uninitialized] 793 | double mhprobGT = (double)exp(-1 * constraint * (propBeta - beta)) * wj / wi * qji / qij; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ sw_mh_helper.cpp:737:10: note: ‘wj’ was declared here 737 | double wj; | ^~ sw_mh_helper.cpp:793:61: warning: ‘propBeta’ may be used uninitialized [-Wmaybe-uninitialized] 793 | double mhprobGT = (double)exp(-1 * constraint * (propBeta - beta)) * wj / wi * qji / qij; | ~~~~~~~~~~^~~~~~~ sw_mh_helper.cpp:738:10: note: ‘propBeta’ was declared here 738 | double propBeta; | ^~~~~~~~ sw_mh_helper.cpp: In function ‘Rcpp::List make_swaps(Rcpp::List, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::List, Rcpp::CharacterVector, double, double, double, int, double, double, const Graph&)’: sw_mh_helper.cpp:599:16: warning: ‘curr_cd’ may be used uninitialized [-Wmaybe-uninitialized] 599 | cd_pair(0) = curr_cd; | ~~~~~~~~~~~^~~~~~~~~ sw_mh_helper.cpp:473:9: note: ‘curr_cd’ was declared here 473 | int curr_cd; | ^~~~~~~ sw_mh_helper.cpp:600:16: warning: ‘prop_cd’ may be used uninitialized [-Wmaybe-uninitialized] 600 | cd_pair(1) = prop_cd; | ~~~~~~~~~~~^~~~~~~~~ sw_mh_helper.cpp:474:9: note: ‘prop_cd’ was declared here 474 | int prop_cd; | ^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_op.cpp -o tree_op.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from tree_op.h:1, from tree_op.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ tree_op.cpp: In function ‘int find_subroot(const Tree&, const std::vector&)’: tree_op.cpp:186:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for (int k = 0; k < nbors->size(); k++) { | ~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c varinfo.cpp -o varinfo.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from varinfo.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c wilson.cpp -o wilson.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from smc_base.h:10, from tree_op.h:1, from wilson.h:1, from wilson.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ wilson.cpp: In function ‘int walk_until(const Graph&, int, std::vector >&, int, const std::vector&, const std::vector&, const arma::uvec&)’: wilson.cpp:208:52: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 208 | if (ignore[proposal] || counties[proposal] != county) { g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o redist.so RcppExports.o adj_reduce.o check_contiguity.o coarsen.o coloring.o compact_vectorized.o constraint_calc_helper.o contiguity.o cores.o crsg.o distance_helpers.o kirchhoff.o make_swaps_helper.o map_calc.o mcmc_gibbs.o merge_split.o pareto.o pop_helpers.o random.o renumber.o rsg.o scorer_helpers.o shatter_search.o smc.o smc_base.o splits.o sw_mh_alg.o sw_mh_helper.o tree_op.o varinfo.o wilson.o -latomic -lpthread -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE2Kj1u/R.INSTALL16ea501da4c174/redist/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redist/00new/redist/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redist) checking RcppSimdJson_0.1.14.tar.gz ... checking arcgisgeocode_0.3.0.tar.gz ... checking arcgislayers_0.4.0.tar.gz ... checking arcgisutils_0.3.3.tar.gz ... checking CooRTweet_2.1.2.tar.gz ... checking cyclestreets_1.0.3.tar.gz ... checking ichimoku_1.5.6.tar.gz ... checking kmeRtone_1.0.tar.gz ... checking opentripplanner_0.5.2.tar.gz ... checking osrm_4.2.0.tar.gz ... checking robotoolbox_1.4.tar.gz ... checking rTwig_1.4.0.tar.gz ... checking simfinapi_1.0.1.tar.gz ... checking td_0.0.6.tar.gz ... checking geomander_2.5.0.tar.gz ... Depends: Package: RcppSimdJson Imports: Rcpp, utils LinkingTo: Rcpp Timings: user system elapsed RcppSimdJson 84.625 5.789 116.731 Results: Check status summary: OK Source packages 1 Reverse depends 14 Check results summary: RcppSimdJson ... OK rdepends_arcgisgeocode ... OK rdepends_arcgislayers ... OK rdepends_arcgisutils ... OK rdepends_CooRTweet ... OK rdepends_cyclestreets ... OK rdepends_geomander ... OK rdepends_ichimoku ... OK rdepends_kmeRtone ... OK rdepends_opentripplanner ... OK rdepends_osrm ... OK rdepends_robotoolbox ... OK rdepends_rTwig ... OK rdepends_simfinapi ... OK rdepends_td ... OK Check results changes: Package: td Check: CRAN incoming feasibility Old result: NOTE