* installing *source* package 'RcppPlanc' ... ** using staged installation -- Building for: Unix Makefiles -- The C compiler identification is GNU 12.3.0 -- The CXX compiler identification is GNU 12.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: D:/rtools43/x86_64-w64-mingw32.static.posix/bin/gcc.exe - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: D:/rtools43/x86_64-w64-mingw32.static.posix/bin/g++.exe - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found R: D:/RCompile/recent/R/bin/x64/R.exe (found version "R Under development (unstable) (2024-02-18 r85939 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see https://www.gnu.org/licenses/. ") -- MKL_THREADING = OMP -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found R_Rcpp: D:/RCompile/CRANpkg/lib/4.4/Rcpp -- Found R_RcppArmadillo: D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo -- Found R_RcppProgress: D:/RCompile/CRANpkg/lib/4.4/RcppProgress -- Found Git: D:/rtools43/usr/bin/git.exe (found version "2.43.0") -- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC -- Checking for one of the modules 'hwloc' -- Looking for HWLOC - not found using PkgConfig. Perhaps you should add the directory containing hwloc.pc to the PKG_CONFIG_PATH environment variable. -- Looking for HWLOC - PkgConfig not used -- Looking for hwloc -- hwloc.h not found -- Looking for hwloc -- lib hwloc not found -- Could NOT find HWLOC (missing: HWLOC_LIBRARIES HWLOC_WORKS) CMake Warning (dev) at D:/rtools43/x86_64-w64-mingw32.static.posix/share/cmake-3.28.1/Modules/FetchContent.cmake:1331 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): CMakeLists.txt:147 (FetchContent_Declare) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/_deps/highfive-src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found HDF5: hdf5-static (found version "1.12.1") -- Performing Test FINITE_MATH -- Performing Test FINITE_MATH - Success -- Performing Test SIGNALING_NANS -- Performing Test SIGNALING_NANS - Success -- Performing Test ROUNDING_MATH -- Performing Test ROUNDING_MATH - Success -- Performing Test TRAPPING_MATH -- Performing Test TRAPPING_MATH - Success -- Performing Test ERRNO_MATH -- Performing Test ERRNO_MATH - Success -- Performing Test UNSIGNED_ZERO -- Performing Test UNSIGNED_ZERO - Success -- Looking for openblas/cblas.h -- Looking for openblas/cblas.h - found -- Configuring done (11.8s) -- Generating done (0.0s) -- Build files have been written to: D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src ** libs running 'src/Makefile.ucrt' ... D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -SD:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools -BD:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src --check-build-system CMakeFiles/Makefile.cmake 0 -- MKL_THREADING = OMP -- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC -- Checking for one of the modules 'hwloc' -- Looking for HWLOC - not found using PkgConfig. Perhaps you should add the directory containing hwloc.pc to the PKG_CONFIG_PATH environment variable. -- Looking for HWLOC - PkgConfig not used -- Looking for hwloc -- hwloc.h not found -- Looking for hwloc -- lib hwloc not found -- Could NOT find HWLOC (missing: HWLOC_LIBRARIES HWLOC_WORKS) CMake Warning (dev) at D:/rtools43/x86_64-w64-mingw32.static.posix/share/cmake-3.28.1/Modules/FetchContent.cmake:1331 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): CMakeLists.txt:147 (FetchContent_Declare) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/_deps/highfive-src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (1.2s) -- Generating done (0.1s) -- Build files have been written to: D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cmake_progress_start D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/CMakeFiles D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/hwloc.dir/build.make CMakeFiles/hwloc.dir/depend D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cmake_depends "Unix Makefiles" D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/CMakeFiles/hwloc.dir/DependInfo.cmake "--color=" /usr/bin/make -f CMakeFiles/hwloc.dir/build.make CMakeFiles/hwloc.dir/build [ 7%] Creating directories for 'hwloc' D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -Dcfgdir= -P D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/tmp/hwloc-mkdirs.cmake D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-mkdir [ 14%] Performing download step (download, verify and extract) for 'hwloc' cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -P D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/download-hwloc.cmake -- Downloading... dst='D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-2.9.3.tar.gz' timeout='none' inactivity timeout='none' -- Using src='https://download.open-mpi.org/release/hwloc/v2.9/hwloc-2.9.3.tar.gz' -- [download 0% complete] -- [download 1% complete] -- [download 2% complete] -- [download 3% complete] -- [download 4% complete] -- [download 5% complete] -- [download 6% complete] -- [download 7% complete] -- [download 8% complete] -- [download 9% complete] -- [download 10% complete] -- [download 11% complete] -- [download 12% complete] -- [download 13% complete] -- [download 14% complete] -- [download 15% complete] -- [download 16% complete] -- [download 17% complete] -- [download 18% complete] -- [download 19% complete] -- [download 20% complete] -- [download 21% complete] -- [download 22% complete] -- [download 23% complete] -- [download 24% complete] -- [download 25% complete] -- [download 26% complete] -- [download 27% complete] -- [download 28% complete] -- [download 29% complete] -- [download 30% complete] -- [download 31% complete] -- [download 32% complete] -- 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D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -P D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/verify-hwloc.cmake cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -P D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/extract-hwloc.cmake -- extracting... src='D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-2.9.3.tar.gz' dst='D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc' -- extracting... [tar xfz] -- extracting... [analysis] -- extracting... [rename] -- extracting... [clean up] -- extracting... done cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-download [ 21%] No update step for 'hwloc' D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E echo_append D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-update [ 28%] Performing patch step for 'hwloc' cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cat D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/patches/00_remove_stdio.patch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/patches/01_remove_sprintf.patch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/patches/02_adjust_windows_types.patch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/patches/03_remove_abort.patch | D:/rtools43/usr/bin/patch.exe -p1 -l patching file hwloc/components.c patching file hwloc/distances.c patching file hwloc/memattrs.c patching file hwloc/pci-common.c patching file hwloc/topology-aix.c patching file hwloc/topology-bgq.c patching file hwloc/topology-cuda.c patching file hwloc/topology-darwin.c patching file hwloc/topology-levelzero.c patching file hwloc/topology-linux.c patching file hwloc/topology-nvml.c patching file hwloc/topology-opencl.c patching file hwloc/topology-pci.c patching file hwloc/topology-rsmi.c patching file hwloc/topology-solaris.c patching file hwloc/topology-synthetic.c patching file hwloc/topology-windows.c patching file hwloc/topology-x86.c patching file hwloc/topology-xml-libxml.c patching file hwloc/topology-xml-nolibxml.c patching file hwloc/topology-xml.c patching file hwloc/topology.c patching file hwloc/cpukinds.c patching file hwloc/topology-freebsd.c patching file hwloc/topology-linux.c patching file hwloc/topology-rsmi.c patching file hwloc/topology-windows.c patching file hwloc/topology-xml.c patching file include/hwloc/cuda.h patching file include/hwloc/cudart.h patching file include/hwloc/levelzero.h patching file include/hwloc/nvml.h patching file include/hwloc/opencl.h patching file include/hwloc/openfabrics-verbs.h patching file include/hwloc/rsmi.h patching file hwloc/topology-windows.c patching file hwloc/distances.c patching file hwloc/topology-linux.c cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-patch [ 35%] Performing configure step for 'hwloc' cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E env "CFLAGS=-DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign " sh ../hwloc/configure --with-pic --prefix=/out/ --disable-picky --enable-shared=no --enable-static=yes --disable-cairo --disable-libxml2 --disable-io --disable-plugin-dlopen --disable-plugin-ltdl --enable-embedded-mode --build=x86_64-w64-mingw32 ### ### Configuring hwloc distribution tarball ### Startup tests ### checking build system type... x86_64-w64-mingw32 checking host system type... x86_64-w64-mingw32 checking target system type... x86_64-w64-mingw32 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '197608' is supported by ustar format... yes checking whether GID '197121' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc ... gcc3 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc ... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /x86_64-w64-mingw32.static.posix/bin/nm -B checking the name lister (/x86_64-w64-mingw32.static.posix/bin/nm -B) interface... BSD nm checking whether ln -s works... no, using cp -pR checking the maximum length of command line arguments... 8192 checking how to convert x86_64-w64-mingw32 file names to x86_64-w64-mingw32 format... func_convert_file_msys_to_w32 checking how to convert x86_64-w64-mingw32 file names to toolchain format... func_convert_file_msys_to_w32 checking for /x86_64-w64-mingw32.static.posix/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /x86_64-w64-mingw32.static.posix/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for as... as checking for dlltool... (cached) dlltool checking for objdump... (cached) objdump checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking dependency style of g++ -std=gnu++17 ... gcc3 checking how to run the C++ preprocessor... g++ -std=gnu++17 -E checking for ld used by g++ -std=gnu++17 ... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking whether the g++ -std=gnu++17 linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking for g++ -std=gnu++17 option to produce PIC... -DDLL_EXPORT -DPIC checking if g++ -std=gnu++17 PIC flag -DDLL_EXPORT -DPIC works... yes checking if g++ -std=gnu++17 static flag -static works... yes checking if g++ -std=gnu++17 supports -c -o file.o... yes checking if g++ -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++17 linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc ... (cached) gcc3 checking for gcc options needed to detect all undeclared functions... none needed checking for pkg-config... /x86_64-w64-mingw32.static.posix/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking how to run the C preprocessor... gcc -E checking for X... no ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /d/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build configure: hwloc srcdir: /d/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc configure: Detected VPATH build checking for hwloc version... 2.9.3 checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... (none) checking for hwloc symbol prefix... hwloc_ checking for the C compiler vendor... gnu checking size of void *... 8 checking which OS support to include... Windows checking which CPU support to include... x86_64 checking size of unsigned long... 4 checking size of unsigned int... 4 checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(constructor)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking for dirent.h... yes checking for strings.h... (cached) yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking for sys/mman.h... no **** Windows-specific checks checking for windows.h... yes checking for KAFFINITY... yes checking for PROCESSOR_CACHE_TYPE... yes checking for CACHE_DESCRIPTOR... yes checking for LOGICAL_PROCESSOR_RELATIONSHIP... yes checking for RelationProcessorPackage... no checking for GROUP_AFFINITY... yes checking for PROCESSOR_RELATIONSHIP... yes checking for NUMA_NODE_RELATIONSHIP... yes checking for CACHE_RELATIONSHIP... yes checking for PROCESSOR_GROUP_INFO... yes checking for GROUP_RELATIONSHIP... yes checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... yes checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... yes checking whether GetModuleFileName is declared... yes checking for main in -lgdi32... yes checking for PostQuitMessage in -luser32... yes checking for lib... no **** end of Windows-specific checks checking for sys/param.h... yes checking for sys/sysctl.h... no checking for sysctl... no checking for sysctlbyname... no checking whether pthread_setaffinity_np is declared... no checking whether pthread_getaffinity_np is declared... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking whether _SC_NPROCESSORS_ONLN is declared... no checking whether _SC_NPROCESSORS_CONF is declared... no checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... no checking whether _SC_PAGE_SIZE is declared... no checking whether _SC_LARGE_PAGESIZE is declared... no checking for mach/mach_init.h... no checking for mach_init.h... no checking for mach/mach_host.h... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... yes checking whether _putenv is declared... yes checking whether snprintf is correct... yes checking whether getprogname is declared... no checking whether getexecname is declared... no checking for program_invocation_name... no checking for __progname... no checking for bash... /usr/bin/sh checking for ffs... no checking for ffsl... no checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... no checking for malloc.h... yes checking for getpagesize... yes checking for memalign... no checking for posix_memalign... no checking for sys/utsname.h... no checking for uname... no checking for pthread_mutex_lock... yes **** x86 CPUID configuration checking for x86 cpuid... yes **** end of x86 CPUID configuration **** component and plugin-specific configuration checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml windows x86 checking components to build as plugins... **** end of component and plugin configuration checking for diff... /usr/bin/diff ### ### Performing final hwloc configuration ### checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating hwloc/Makefile config.status: creating include/private/autogen/config.h config.status: creating include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------------------------------------------------- Hwloc optional build support status (more details can be found above): Probe / display I/O devices: no Graphical output: no (disabled in embedded mode) XML input / output: basic Netloc functionality: no Plugin support: no ----------------------------------------------------------------------------- cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-configure [ 42%] Performing build step for 'hwloc' cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build && /usr/bin/make Making all in include make[4]: Nothing to be done for 'all'. Making all in hwloc CC topology.lo CC traversal.lo CC distances.lo ../../hwloc/hwloc/distances.c: In function 'hwloc_internal_distances_print_matrix': ../../hwloc/hwloc/distances.c:37:15: warning: unused variable 'j' [-Wunused-variable] 37 | unsigned i, j; | ^ ../../hwloc/hwloc/distances.c:37:12: warning: unused variable 'i' [-Wunused-variable] 37 | unsigned i, j; | ^ ../../hwloc/hwloc/distances.c:36:7: warning: unused variable 'gp' [-Wunused-variable] 36 | int gp = !HWLOC_DIST_TYPE_USE_OS_INDEX(dist->unique_type); | ^~ ../../hwloc/hwloc/distances.c:35:19: warning: unused variable 'values' [-Wunused-variable] 35 | hwloc_uint64_t *values = dist->values; | ^~~~~~ ../../hwloc/hwloc/distances.c:34:16: warning: unused variable 'objs' [-Wunused-variable] 34 | hwloc_obj_t *objs = dist->objs; | ^~~~ ../../hwloc/hwloc/distances.c:33:12: warning: unused variable 'nbobjs' [-Wunused-variable] 33 | unsigned nbobjs = dist->nbobjs; | ^~~~~~ CC memattrs.lo ../../hwloc/hwloc/memattrs.c: In function 'hwloc_memattr_get_initiators': ../../hwloc/hwloc/memattrs.c:786:9: warning: unused variable 'err' [-Wunused-variable] 786 | int err = from_internal_location(&imi->initiator, &initiators[i]); | ^~~ CC cpukinds.lo CC components.lo ../../hwloc/hwloc/components.c: In function 'hwloc_disc_components_enable_others': ../../hwloc/hwloc/components.c:884:9: warning: variable 'first' set but not used [-Wunused-but-set-variable] 884 | int first = 1; | ^~~~~ CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo ../../hwloc/hwloc/topology-synthetic.c: In function 'hwloc__export_synthetic_memory_children': ../../hwloc/hwloc/topology-synthetic.c:1391:20: warning: variable 'warned' set but not used [-Wunused-but-set-variable] 1391 | static int warned = 0; | ^~~~~~ ../../hwloc/hwloc/topology-synthetic.c:1397:20: warning: variable 'warned' set but not used [-Wunused-but-set-variable] 1397 | static int warned = 0; | ^~~~~~ CC topology-xml.lo ../../hwloc/hwloc/topology-xml.c: In function 'hwloc__xml_import_object_attr': ../../hwloc/hwloc/topology-xml.c:276:20: warning: variable 'warned' set but not used [-Wunused-but-set-variable] 276 | static int warned = 0; | ^~~~~~ ../../hwloc/hwloc/topology-xml.c:376:20: warning: variable 'warned' set but not used [-Wunused-but-set-variable] 376 | static int warned = 0; | ^~~~~~ ../../hwloc/hwloc/topology-xml.c: In function 'hwloc__xml_import_report_outoforder': ../../hwloc/hwloc/topology-xml.c:786:15: warning: unused variable 'origprogname' [-Wunused-variable] 786 | const char *origprogname = hwloc_obj_get_info_by_name(topology->levels[0][0], "ProcessName"); | ^~~~~~~~~~~~ ../../hwloc/hwloc/topology-xml.c:785:15: warning: unused variable 'origversion' [-Wunused-variable] 785 | const char *origversion = hwloc_obj_get_info_by_name(topology->levels[0][0], "hwlocVersion"); | ^~~~~~~~~~~ CC topology-xml-nolibxml.lo CC topology-windows.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Nothing to be done for 'all-am'. cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-build [ 50%] Performing install step for 'hwloc' cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build && /usr/bin/make install Making install in include make[5]: Nothing to be done for 'install-exec-am'. Making install in hwloc /usr/bin/make install-exec-hook [ ! -r .libs/libhwloc.def ] || /usr/bin/install -c .libs/libhwloc.def D:/rtools43/out/lib make[5]: Nothing to be done for 'install-exec-am'. cd D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-build && D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-install [ 57%] Completed 'hwloc' D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E make_directory D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/CMakeFiles D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/CMakeFiles/hwloc-complete D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E touch D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc-stamp/hwloc-done D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove_directory D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/hwloc-prefix/src/hwloc/utils/lstopo [ 57%] Built target hwloc /usr/bin/make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cmake_depends "Unix Makefiles" D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color=" /usr/bin/make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build [ 64%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.obj D:/rtools43/x86_64-w64-mingw32.static.posix/bin/gcc.exe @CMakeFiles/hw_detect.dir/includes_C.rsp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -g -DNDEBUG -std=gnu99 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D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/conversion.cpp [ 92%] Building C object CMakeFiles/RcppPlanc.dir/common/detect_blas.c.obj D:/rtools43/x86_64-w64-mingw32.static.posix/bin/gcc.exe -DHAVE_OPENBLAS_CBLAS_H -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L @CMakeFiles/RcppPlanc.dir/includes_C.rsp -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -g -DNDEBUG -std=gnu99 -fopenmp -ffinite-math-only -fno-signaling-nans -fno-rounding-math -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/common/detect_blas.c.obj -MF CMakeFiles/RcppPlanc.dir/common/detect_blas.c.obj.d -o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.obj -c D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/common/detect_blas.c D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/common/detect_blas.c: In function 'get_openblas_parallel': D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/common/detect_blas.c:11:46: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 11 | const openblas_init_t parallel_address = (openblas_init_t)dlsym(libloc, "openblas_get_parallel"); | ^ D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/common/detect_blas.c: In function 'get_openblas_set': D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/common/detect_blas.c:16:40: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 16 | const openblas_set_t set_address = (openblas_set_t)dlsym(libloc, "openblas_set_num_threads"); | ^ [100%] Linking CXX shared library RcppPlanc.dll D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E rm -f CMakeFiles/RcppPlanc.dir/objects.a D:/rtools43/x86_64-w64-mingw32.static.posix/bin/ar.exe qc CMakeFiles/RcppPlanc.dir/objects.a @CMakeFiles/RcppPlanc.dir/objects1.rsp 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D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/_deps/highfive-src/include/highfive/H5Version.hpp D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/_deps/highfive-build/include/highfive/H5Version.hpp D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/CMakeFiles/CheckTypeSize/SIZE_OF_VOIDP.c D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/CMakeFiles/FindOpenMP/OpenMPCheckVersion.c D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/FindOpenMP/OpenMPCheckVersion.cpp D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/FindOpenMP/OpenMPTryFlag.c D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/FindOpenMP/OpenMPTryFlag.cpp D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/3.28.1/CompilerIdC/CMakeCCompilerId.c D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E remove D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/tools/../src/3.28.1/CompilerIdCXX/CMakeCXXCompilerId.cpp [100%] Built target RcppPlanc D:/rtools43/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cmake_progress_start D:/temp/RtmpQHto4Y/R.INSTALLcfc432ef1876/RcppPlanc/src/CMakeFiles 0 installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-RcppPlanc/00new/RcppPlanc/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppPlanc)