* installing *source* package ‘RcppPlanc’ ... ** using staged installation ERROR: cannot query more than one variable -- The C compiler identification is Clang 17.0.6 -- The CXX compiler identification is Clang 17.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-17 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-17 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found R: /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/R_check_bin/R (found version "'R' should not be used without a path -- see par. 1.6 of the manual ") -- MKL_THREADING = OMP -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Found OpenMP_C: -fopenmp=libomp (found version "5.1") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP: TRUE (found version "5.1") -- Found R_Rcpp: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp -- Found R_RcppArmadillo: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo -- Found R_RcppProgress: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress -- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC -- Checking for one of the modules 'hwloc' -- Looking for HWLOC - found using PkgConfig -- Found HWLOC: hwloc -- Performing Test HAVE_HWLOC_PARENT_MEMBER -- Performing Test HAVE_HWLOC_PARENT_MEMBER - Success -- Performing Test HAVE_HWLOC_CACHE_ATTR -- Performing Test HAVE_HWLOC_CACHE_ATTR - Success -- Performing Test HAVE_HWLOC_OBJ_PU -- Performing Test HAVE_HWLOC_OBJ_PU - Success -- Looking for hwloc_bitmap_free in hwloc -- Looking for hwloc_bitmap_free in hwloc - found CMake Warning (dev) at /usr/share/cmake-3.28/Modules/FetchContent.cmake:1331 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): CMakeLists.txt:147 (FetchContent_Declare) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") -- Performing Test FINITE_MATH -- Performing Test FINITE_MATH - Success -- Performing Test SIGNALING_NANS -- Performing Test SIGNALING_NANS - Failed -- Performing Test ROUNDING_MATH -- Performing Test ROUNDING_MATH - Success -- Performing Test TRAPPING_MATH -- Performing Test TRAPPING_MATH - Success -- Performing Test ERRNO_MATH -- Performing Test ERRNO_MATH - Success -- Performing Test UNSIGNED_ZERO -- Performing Test UNSIGNED_ZERO - Success -- Looking for cblas.h -- Looking for cblas.h - found -- Configuring done (7.6s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src ** libs /usr/bin/cmake -S/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools -B/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' cd /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 16%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.o /usr/bin/clang-17 -I/usr/local/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu99 -fPIC -MD -MT CMakeFiles/hw_detect.dir/common/hw_detect.c.o -MF CMakeFiles/hw_detect.dir/common/hw_detect.c.o.d -o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/common/hw_detect.c make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 16%] Built target hw_detect make -f CMakeFiles/RcppPlanc.dir/build.make CMakeFiles/RcppPlanc.dir/depend make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' cd /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles/RcppPlanc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' make -f CMakeFiles/RcppPlanc.dir/build.make CMakeFiles/RcppPlanc.dir/build make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 33%] Building CXX object CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o /usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/tmp/R-d-clang-17/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o -MF CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o.d -o CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/rcppplanc_nmf.cpp [ 50%] Building CXX object CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o /usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/tmp/R-d-clang-17/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o -MF CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o.d -o CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/RcppExports.cpp [ 66%] Building CXX object CMakeFiles/RcppPlanc.dir/conversion.cpp.o /usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/tmp/R-d-clang-17/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/conversion.cpp.o -MF CMakeFiles/RcppPlanc.dir/conversion.cpp.o.d -o CMakeFiles/RcppPlanc.dir/conversion.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/conversion.cpp [ 83%] Building C object CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o /usr/bin/clang-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/tmp/R-d-clang-17/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o -MF CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o.d -o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/common/detect_blas.c [100%] Linking CXX shared library RcppPlanc.so /usr/bin/cmake -E cmake_link_script CMakeFiles/RcppPlanc.dir/link.txt --verbose=1 /usr/bin/clang++-17 -fPIC -I/usr/local/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -shared -fopenmp=libomp -shared -Wl,-soname,RcppPlanc.so -o RcppPlanc.so CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o CMakeFiles/RcppPlanc.dir/conversion.cpp.o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-rpath,/home/hornik/tmp/R-d-clang-17/lib:/usr/lib/x86_64-linux-gnu/hdf5/serial -lR /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm -L/usr/lib/x86_64-linux-gnu -lhwloc /usr/bin/cmake -E remove /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/CMakeFiles/hdf5/cmake_hdf5_test.c make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [100%] Built target RcppPlanc make[1]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' /usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles 0 installing to /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppPlanc)