* installing *source* package ‘RcppPlanc’ ...
** using staged installation
-- The C compiler identification is Clang 17.0.6
-- The CXX compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/clang-17 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++-17 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found R: /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/R_check_bin/R (found version "'R' should not be used without a path -- see par. 1.6 of the manual
") 
-- MKL_THREADING = OMP
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so  
-- Looking for cheev_
-- Looking for cheev_ - not found
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so  
-- Found OpenMP_C: -fopenmp=libomp (found version "5.1") 
-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") 
-- Found OpenMP: TRUE (found version "5.1")  
-- Found R_Rcpp: /srv/hornik/tmp/CRAN/Library/Rcpp  
-- Found R_RcppArmadillo: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo  
-- Found R_RcppProgress: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress  
-- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC
-- Checking for one of the modules 'hwloc'
-- Looking for HWLOC - found using PkgConfig
-- Found HWLOC: hwloc  
-- Performing Test HAVE_HWLOC_PARENT_MEMBER
-- Performing Test HAVE_HWLOC_PARENT_MEMBER - Success
-- Performing Test HAVE_HWLOC_CACHE_ATTR
-- Performing Test HAVE_HWLOC_CACHE_ATTR - Success
-- Performing Test HAVE_HWLOC_OBJ_PU
-- Performing Test HAVE_HWLOC_OBJ_PU - Success
-- Looking for hwloc_bitmap_free in hwloc
-- Looking for hwloc_bitmap_free in hwloc - found
-- CPM: Adding package HighFive@2.8.0 (2.8.0)
CMake Deprecation Warning at /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10")  
-- Performing Test FINITE_MATH
-- Performing Test FINITE_MATH - Success
-- Performing Test SIGNALING_NANS
-- Performing Test SIGNALING_NANS - Failed
-- Performing Test ROUNDING_MATH
-- Performing Test ROUNDING_MATH - Success
-- Performing Test TRAPPING_MATH
-- Performing Test TRAPPING_MATH - Success
-- Performing Test ERRNO_MATH
-- Performing Test ERRNO_MATH - Success
-- Performing Test UNSIGNED_ZERO
-- Performing Test UNSIGNED_ZERO - Success
-- Looking for cblas.h
-- Looking for cblas.h - found
-- Configuring done (8.9s)
-- Generating done (0.0s)
-- Build files have been written to: /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src
** libs
/usr/bin/cmake -S/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools -B/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
make  -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend
make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
cd /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
make  -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build
make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
[ 14%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.o
/usr/bin/clang-17  -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu99 -fPIC -MD -MT CMakeFiles/hw_detect.dir/common/hw_detect.c.o -MF CMakeFiles/hw_detect.dir/common/hw_detect.c.o.d -o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/common/hw_detect.c
make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
[ 14%] Built target hw_detect
make  -f CMakeFiles/RcppPlanc.dir/build.make CMakeFiles/RcppPlanc.dir/depend
make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
[ 28%] Generating _deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp
/usr/bin/cmake -Din_file:FILEPATH=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include/highfive/bits/H5Inspector_misc.hpp -Dpatch_file:FILEPATH=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/patch/remove_assert_highfive.patch -Dout_file:FILEPATH=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp -P/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/cmake/PatchFile.cmake
'/usr/bin/patch' '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include/highfive/bits/H5Inspector_misc.hpp' '--input=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/patch/remove_assert_highfive.patch' '--output=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp' '--ignore-whitespace'
patching file /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp (read from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include/highfive/bits/H5Inspector_misc.hpp)
cd /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles/RcppPlanc.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
make  -f CMakeFiles/RcppPlanc.dir/build.make CMakeFiles/RcppPlanc.dir/build
make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
[ 42%] Building CXX object CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o
/usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/srv/hornik/tmp/CRAN/Library/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o -MF CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o.d -o CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/rcppplanc_nmf.cpp
[ 57%] Building CXX object CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o
/usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/srv/hornik/tmp/CRAN/Library/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o -MF CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o.d -o CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/RcppExports.cpp
[ 71%] Building CXX object CMakeFiles/RcppPlanc.dir/conversion.cpp.o
/usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/srv/hornik/tmp/CRAN/Library/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/conversion.cpp.o -MF CMakeFiles/RcppPlanc.dir/conversion.cpp.o.d -o CMakeFiles/RcppPlanc.dir/conversion.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/conversion.cpp
[ 85%] Building C object CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o
/usr/bin/clang-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/srv/hornik/tmp/CRAN/Library/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -MD -MT CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o -MF CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o.d -o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/common/detect_blas.c
[100%] Linking CXX shared library RcppPlanc.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/RcppPlanc.dir/link.txt --verbose=1
/usr/bin/clang++-17 -fPIC -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -fopenmp=libomp -Wl,--export-dynamic -fopenmp -Wl,-O1 -L/home/hornik/tmp/R-d-clang-17/lib -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n -shared -Wl,-soname,RcppPlanc.so -o RcppPlanc.so CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o CMakeFiles/RcppPlanc.dir/conversion.cpp.o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o CMakeFiles/hw_detect.dir/common/hw_detect.c.o  -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm -L/usr/lib/x86_64-linux-gnu -lhwloc 
/usr/bin/cmake -E remove /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/CMakeFiles/hdf5/cmake_hdf5_test.c
make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
[100%] Built target RcppPlanc
make[1]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src'
/usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles 0
installing to /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppPlanc)