* installing *source* package ‘RcppPlanc’ ... ** using staged installation -- The C compiler identification is Clang 17.0.6 -- The CXX compiler identification is Clang 17.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-17 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-17 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found R: /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/R_check_bin/R (found version "'R' should not be used without a path -- see par. 1.6 of the manual ") -- MKL_THREADING = OMP -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Found OpenMP_C: -fopenmp=libomp (found version "5.1") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP: TRUE (found version "5.1") -- Found R_Rcpp: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp -- Found R_RcppArmadillo: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo -- Found R_RcppProgress: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress -- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC -- Checking for one of the modules 'hwloc' -- Looking for HWLOC - found using PkgConfig -- Found HWLOC: hwloc -- Performing Test HAVE_HWLOC_PARENT_MEMBER -- Performing Test HAVE_HWLOC_PARENT_MEMBER - Success -- Performing Test HAVE_HWLOC_CACHE_ATTR -- Performing Test HAVE_HWLOC_CACHE_ATTR - Success -- Performing Test HAVE_HWLOC_OBJ_PU -- Performing Test HAVE_HWLOC_OBJ_PU - Success -- Looking for hwloc_bitmap_free in hwloc -- Looking for hwloc_bitmap_free in hwloc - found -- CPM: Adding package HighFive@2.8.0 (2.8.0) CMake Deprecation Warning at /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") -- Performing Test UNSAFE_MATH -- Performing Test UNSAFE_MATH - Success -- Performing Test FINITE_MATH -- Performing Test FINITE_MATH - Success -- Performing Test TRAPPING_MATH -- Performing Test TRAPPING_MATH - Success -- Performing Test ERRNO_MATH -- Performing Test ERRNO_MATH - Success -- Performing Test UNSIGNED_ZERO -- Performing Test UNSIGNED_ZERO - Success -- Performing Test RECIPROCAL_MATH -- Performing Test RECIPROCAL_MATH - Success -- Looking for cblas.h -- Looking for cblas.h - found -- Configuring done (9.0s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src ** libs /usr/bin/cmake -S/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools -B/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' cd /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 14%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.o /usr/bin/clang-17 -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu99 -fPIC -MD -MT CMakeFiles/hw_detect.dir/common/hw_detect.c.o -MF CMakeFiles/hw_detect.dir/common/hw_detect.c.o.d -o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/common/hw_detect.c make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 14%] Built target hw_detect make -f CMakeFiles/RcppPlanc.dir/build.make CMakeFiles/RcppPlanc.dir/depend make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 28%] Generating _deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp /usr/bin/cmake -Din_file:FILEPATH=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include/highfive/bits/H5Inspector_misc.hpp -Dpatch_file:FILEPATH=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/patch/remove_assert_highfive.patch -Dout_file:FILEPATH=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp -P/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/cmake/PatchFile.cmake '/usr/bin/patch' '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include/highfive/bits/H5Inspector_misc.hpp' '--input=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/patch/remove_assert_highfive.patch' '--output=/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp' '--ignore-whitespace' patching file /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include/highfive/bits/H5Inspector_misc.hpp (read from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include/highfive/bits/H5Inspector_misc.hpp) cd /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles/RcppPlanc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' make -f CMakeFiles/RcppPlanc.dir/build.make CMakeFiles/RcppPlanc.dir/build make[2]: Entering directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [ 42%] Building CXX object CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o /usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fopenmp=libomp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o -MF CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o.d -o CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/rcppplanc_nmf.cpp In file included from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/rcppplanc_nmf.cpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/rcppplanc_nmf.cpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. [ 57%] Building CXX object CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o /usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fopenmp=libomp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o -MF CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o.d -o CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/RcppExports.cpp In file included from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. [ 71%] Building CXX object CMakeFiles/RcppPlanc.dir/conversion.cpp.o /usr/bin/clang++-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fopenmp=libomp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT CMakeFiles/RcppPlanc.dir/conversion.cpp.o -MF CMakeFiles/RcppPlanc.dir/conversion.cpp.o.d -o CMakeFiles/RcppPlanc.dir/conversion.cpp.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/conversion.cpp In file included from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/conversion.cpp:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/conversion.cpp:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. [ 85%] Building C object CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o /usr/bin/clang-17 -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/common -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nnls -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/tools/../src/nmf -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include -I/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-src/include -isystem /usr/include/hdf5/serial -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o -MF CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o.d -o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o -c /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/common/detect_blas.c [100%] Linking CXX shared library RcppPlanc.so /usr/bin/cmake -E cmake_link_script CMakeFiles/RcppPlanc.dir/link.txt --verbose=1 /usr/bin/clang++-17 -fPIC -I/home/hornik/tmp/R-d-clang-17/include -g -O3 -Wall -pedantic -O2 -g -DNDEBUG -fopenmp=libomp -Wl,--export-dynamic -fopenmp -Wl,-O1 -L/home/hornik/tmp/R-d-clang-17/lib -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n -shared -Wl,-soname,RcppPlanc.so -o RcppPlanc.so CMakeFiles/RcppPlanc.dir/rcppplanc_nmf.cpp.o CMakeFiles/RcppPlanc.dir/RcppExports.cpp.o CMakeFiles/RcppPlanc.dir/conversion.cpp.o CMakeFiles/RcppPlanc.dir/common/detect_blas.c.o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm -L/usr/lib/x86_64-linux-gnu -lhwloc /usr/bin/cmake -E remove /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/_deps/highfive-build/CMakeFiles/hdf5/cmake_hdf5_test.c make[2]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' [100%] Built target RcppPlanc make[1]: Leaving directory '/srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src' /usr/bin/cmake -E cmake_progress_start /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/CMakeFiles 0 installing to /srv/hornik/tmp/CRAN/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppPlanc)