* using log directory 'd:/RCompile/CRANincoming/R-devel/RcppPlanc.Rcheck'
* using R Under development (unstable) (2023-12-12 r85669 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'RcppPlanc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RcppPlanc' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Andrew Robbins <robbiand@med.umich.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  Eswar (17:14)
  Gao (20:14)
  Kannan (16:14)
  Kriebel (21:14)
  NMF (14:29)
  NTF (14:33)
  Nonnegativity (3:45)
  Welch (19:14, 21:24)
  al (16:25, 17:24, 19:23, 20:21)
  et (16:21, 17:20, 19:20, 20:18)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'RcppPlanc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... NOTE
Compilation used the following non-portable flag(s):
  '-freciprocal-math' '-funsafe-math-optimizations'
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'd:/RCompile/CRANincoming/R-devel/lib/RcppPlanc/libs/x64/RcppPlanc.dll':
  Found '_assert', possibly from 'assert' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> library(Matrix)
> 
> # Scenario 1 with sparse matrices
> set.seed(1)
> res1 <- onlineINMF(list(ctrl.sparse, stim.sparse), 
+                    minibatchSize = 50, k = 10)
Starting online iNMF scenario 1, factorize all datasets
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
*************************************************Total iterations:  60
Total time:        0 sec
Objective error:   44313.8
*|
> 
> # Scenario 2 with H5 dense matrices
> h5dense1 <- H5Mat(filename = system.file("extdata", "ctrl_dense.h5",
+                              package = "RcppPlanc", mustWork = TRUE),
+                                           dataPath = "scaleData")
> h5dense2 <- H5Mat(filename = system.file("extdata", "stim_dense.h5",
+                              package = "RcppPlanc", mustWork = TRUE),
+                                           dataPath = "scaleData")
> res2 <- onlineINMF(list(ctrl = h5dense1), minibatchSize = 50, k = 10)
==H5Mat constructed==
H5File:    D:/RCompile/CRANincoming/R-devel/lib/RcppPlanc/extdata/ctrl_dense.h5
Mat path:  scaleData
Dimension: 173 x 300
Starting online iNMF scenario 1, factorize all datasets
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
************************************************
======== End of example output (where/before crash/hang up occured ?) ========