Package: BIDistances Check: whether package can be installed New result: ERROR Installation failed. Package: CompositionalRF Check: package dependencies New result: ERROR Package required but not available: ‘Compositional’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Package: DatabionicSwarm Check: examples New result: ERROR Running examples in ‘DatabionicSwarm-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: DBSclustering > ### Title: Databonic swarm clustering (DBS) > ### Aliases: DBSclustering > ### Keywords: DBS swarm clustering cluster analysis cluster > > ### ** Examples > > data("Lsun3D") > Data=Lsun3D$Data > InputDistances=as.matrix(dist(Data)) > ## Example One > > ## Example Two > ## Not run: > ##D ## Example Three > ##D ## Sometimes an automatic Clustering can be improved > ##D ## through an interactive approach, > ##D ## e.g. if Outliers exist (see [Thrun/Ultsch, 2017]) > ##D library(ProjectionBasedClustering) > ##D Cls2=ProjectionBasedClustering::interactiveClustering(genUmatrixList$Umatrix, > ##D genUmatrixList$Bestmatches, Cls) > ## End(Not run) > ## Don't show: > data2=matrix(runif(n = 50),10,5) > distance=as.matrix(dist(data2)) > res2=Pswarm(distance, LC = c(10,12)) Warning in Pswarm(distance, LC = c(10, 12)) : Data matrix is square. Assuming a distance matrix! [1] "Initialization phase successful (Time: 0 secs)." [1] "Starting swarm game ..." [1] "Swarm computation ended (Time: 0.01 secs)." [1] "Adjusting ..." > Cls=DBSclustering(k=2, data2, res2$ProjectedPoints, res2$LC, + PlotIt=FALSE) Loading required namespace: parallelDist Failed with error: ‘unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE’ Warning in DBSclustering(k = 2, data2, res2$ProjectedPoints, res2$LC, PlotIt = FALSE) : DBSclustering: package parallelDist is not installed, falling back to dist(). Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE Calls: DBSclustering ... as.matrix -> loadNamespace -> library.dynam -> dyn.load Execution halted Package: DatabionicSwarm Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘DatabionicSwarm.Rmd’ using rmarkdown Failed with error: 'unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE' Quitting from DatabionicSwarm.Rmd:95-105 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `dyn.load()`: ! unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE --- Backtrace: ▆ 1. ├─DatabionicSwarm::DBSclustering(...) 2. │ └─base::as.matrix(...) 3. └─base::loadNamespace(x) 4. └─base::library.dynam(lib, package, package.lib) 5. └─base::dyn.load(file, DLLpath = DLLpath, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DatabionicSwarm.Rmd' failed with diagnostics: unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE --- failed re-building ‘DatabionicSwarm.Rmd’ SUMMARY: processing the following file failed: ‘DatabionicSwarm.Rmd’ Error: Vignette re-building failed. Execution halted Package: frair Check: whether package can be installed New result: ERROR Installation failed. Package: FuncDiv Check: whether package can be installed New result: ERROR Installation failed. Package: GeneralizedUmatrix Check: examples New result: ERROR Running examples in ‘GeneralizedUmatrix-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: NormalizeUmatrix > ### Title: Normalize Umatrix > ### Aliases: NormalizeUmatrix > ### Keywords: abstract U-matrix AU-Matrix > > ### ** Examples > > data("Chainlink") > Data=Chainlink$Data > Cls=Chainlink$Cls > InputDistances=as.matrix(dist(Data)) > res=cmdscale(d=InputDistances, k = 2, eig = TRUE, add = FALSE, x.ret = FALSE) > ProjectedPoints=as.matrix(res$points) > #see also ProjectionBasedClustering package for other common projection methods > > > ## Don't show: > if(requireNamespace('deldir',quietly = TRUE)) { + resUmatrix=GeneralizedUmatrix(Data[1:2,],ProjectedPoints[1:2,]) + normalizedUmatrix=NormalizeUmatrix(Data[1:2,],resUmatrix$Umatrix, resUmatrix$Bestmatches) + } [1] "Operator: getUmatrix4BMUs() at 5%" [1] "Operator: getUmatrix4BMUs() at 10%" [1] "Operator: getUmatrix4BMUs() at 15%" [1] "Operator: getUmatrix4BMUs() at 20%" [1] "Operator: getUmatrix4BMUs() at 25%" [1] "Operator: getUmatrix4BMUs() at 30%" [1] "Operator: getUmatrix4BMUs() at 35%" [1] "Operator: getUmatrix4BMUs() at 40%" [1] "Operator: getUmatrix4BMUs() at 45%" [1] "Operator: getUmatrix4BMUs() at 50%" [1] "Operator: getUmatrix4BMUs() at 55%" [1] "Operator: getUmatrix4BMUs() at 60%" [1] "Operator: getUmatrix4BMUs() at 65%" [1] "Operator: getUmatrix4BMUs() at 70%" [1] "Operator: getUmatrix4BMUs() at 75%" [1] "Operator: getUmatrix4BMUs() at 80%" [1] "Operator: getUmatrix4BMUs() at 85%" [1] "Operator: getUmatrix4BMUs() at 90%" [1] "Operator: getUmatrix4BMUs() at 95%" [1] "Operator: getUmatrix4BMUs() at 95%" [1] "Operator: calcUmatrix() generates U-Matrix now..." Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE Calls: NormalizeUmatrix ... normUmatrix -> loadNamespace -> library.dynam -> dyn.load Execution halted Package: GeneralizedUmatrix Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘GeneralizedUmatrix.Rmd’ using rmarkdown Quitting from GeneralizedUmatrix.Rmd:65-80 [testgl] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `dyn.load()`: ! unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE --- Backtrace: ▆ 1. └─base::loadNamespace(x) 2. └─base::library.dynam(lib, package, package.lib) 3. └─base::dyn.load(file, DLLpath = DLLpath, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GeneralizedUmatrix.Rmd' failed with diagnostics: unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE --- failed re-building ‘GeneralizedUmatrix.Rmd’ SUMMARY: processing the following file failed: ‘GeneralizedUmatrix.Rmd’ Error: Vignette re-building failed. Execution halted Package: NNS Check: whether package can be installed New result: ERROR Installation failed. Package: qs2 Check: whether package can be installed New result: ERROR Installation failed. Package: Ravages Check: whether package can be installed New result: ERROR Installation failed. Package: Rfast2 Check: whether package can be installed New result: ERROR Installation failed. Package: rNeighborGWAS Check: whether package can be installed New result: ERROR Installation failed. Package: rxode2 Check: whether package can be installed New result: ERROR Installation failed. Package: ScatterDensity Check: examples New result: ERROR Running examples in ‘ScatterDensity-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: DensityScatter.DDCAL > ### Title: Scatter density plot [Brinkmann et al., 2023] > ### Aliases: DensityScatter.DDCAL > ### Keywords: scatter PDE SDH > > ### ** Examples > > ## Don't show: > # Create two bimodial distributions > x1=rnorm(n = 75,mean = 0,sd = 1) > y1=rnorm(n = 75,mean = 0,sd = 1) > x2=rnorm(n = 75,mean = 2.5,sd = 1) > y2=rnorm(n = 75,mean = 2.5,sd = 1) > x=c(x1,x2) > y=c(y1,y2) > > DensityScatter.DDCAL(x, y, Marginals = TRUE) DensityScatter.DDCAL: Estimating Density... Loading required namespace: DataVisualizations Failed with error: ‘unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE’ DensityScatter.DDCAL: Estimating colors... DensityScatter.DDCAL: Plotting... Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so': /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/DataVisualizations/libs/DataVisualizations.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE Calls: DensityScatter.DDCAL -> loadNamespace -> library.dynam -> dyn.load Execution halted Package: scistreer Check: whether package can be installed New result: ERROR Installation failed.