Package: alien
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘basic_usage.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/alien.Rcheck/vign_test/alien/vignettes/basic_usage_files/figure-html/plotting_data-1.png
  768x432 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 11380 bytes
  Input file size = 12250 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10112
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 10034
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 10034
  
  Output IDAT size = 10034 bytes (1346 bytes decrease)
  Output file size = 10112 bytes (2138 bytes = 17.45% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/alien.Rcheck/vign_test/alien/vignettes/basic_usage_files/figure-html/plotting_fit-1.png
  768x432 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 13502 bytes
  Input file size = 14372 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12276
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12276
  
  Output IDAT size = 12276 bytes (1226 bytes decrease)
  Output file size = 12354 bytes (2018 bytes = 14.04% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/alien.Rcheck/vign_test/alien/vignettes/basic_usage_files/figure-html/medfish_plot-1.png
  768x432 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 38515 bytes
  Input file size = 38641 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30043
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30043
  
  Output IDAT size = 30043 bytes (8472 bytes decrease)
  Output file size = 30121 bytes (8520 bytes = 22.05% decrease)
  
  --- finished re-building ‘basic_usage.Rmd’
  
  --- re-building ‘native_discoveries.Rmd’ using rmarkdown
  
  Quitting from lines 18-20 [setup] (native_discoveries.Rmd)
  Error: processing vignette 'native_discoveries.Rmd' failed with diagnostics:
  package or namespace load failed for 'rstan' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so':
    /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so: undefined symbol: _ZN3tbb8internal26task_scheduler_observer_v37observeEb
  --- failed re-building ‘native_discoveries.Rmd’
  
  --- re-building ‘simulations.Rmd’ using rmarkdown
  ** Processing: /home/hornik/tmp/CRAN_recheck/alien.Rcheck/vign_test/alien/vignettes/simulations_files/figure-html/show lambda-1.png
  768x432 pixels, 8 bits/pixel, 254 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 8818 bytes
  Input file size = 9682 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7951
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 7902
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 7902
  
  Output IDAT size = 7902 bytes (916 bytes decrease)
  Output file size = 7980 bytes (1702 bytes = 17.58% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/alien.Rcheck/vign_test/alien/vignettes/simulations_files/figure-html/unnamed-chunk-3-1.png
  672x288 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 12326 bytes
  Input file size = 13196 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11340
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11000
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11000
  
  Output IDAT size = 11000 bytes (1326 bytes decrease)
  Output file size = 11078 bytes (2118 bytes = 16.05% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/alien.Rcheck/vign_test/alien/vignettes/simulations_files/figure-html/lambda_with_proxy-1.png
  768x432 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 9858 bytes
  Input file size = 10728 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9016
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 8984
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 8984
  
  Output IDAT size = 8984 bytes (874 bytes decrease)
  Output file size = 9062 bytes (1666 bytes = 15.53% decrease)
  
  --- finished re-building ‘simulations.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘native_discoveries.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: AovBay
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  See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
  manual.

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  See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
  manual.

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Package: DatabionicSwarm
Check: examples
New result: ERROR
  Running examples in ‘DatabionicSwarm-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: DBSclustering
  > ### Title: Databonic swarm clustering (DBS)
  > ### Aliases: DBSclustering
  > ### Keywords: DBS swarm clustering cluster analysis cluster
  > 
  > ### ** Examples
  > 
  > data("Lsun3D")
  > Data=Lsun3D$Data
  > InputDistances=as.matrix(dist(Data))
  > ## Example One
  > 
  > ## Example Two
  > ## Not run: 
  > ##D ## Example Three
  > ##D ## Sometimes an automatic Clustering can be improved 
  > ##D ## through an interactive approach, 
  > ##D ## e.g. if Outliers exist (see [Thrun/Ultsch, 2017])
  > ##D library(ProjectionBasedClustering)
  > ##D Cls2=ProjectionBasedClustering::interactiveClustering(genUmatrixList$Umatrix, 
  > ##D genUmatrixList$Bestmatches, Cls)
  > ## End(Not run)
  > ## Don't show: 
  > data2=matrix(runif(n = 50),10,5)
  > distance=as.matrix(dist(data2))
  > res2=Pswarm(distance, LC = c(10,12))
  Warning in Pswarm(distance, LC = c(10, 12)) :
    Data matrix is square. Assuming a distance matrix!
  [1] "Initialization phase successful (Time: 0 secs)."
  [1] "Starting swarm game ..."
  [1] "Swarm computation ended (Time: 0.02 secs)."
  [1] "Adjusting ..."
  > Cls=DBSclustering(k=2, data2, res2$ProjectedPoints, res2$LC,
  + PlotIt=FALSE)
  Loading required namespace: parallelDist
  Failed with error:  ‘unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so':
    /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZTIN3tbb4taskE’
  Warning in DBSclustering(k = 2, data2, res2$ProjectedPoints, res2$LC, PlotIt = FALSE) :
    DBSclustering: package parallelDist is not installed, falling back to dist().
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so':
    /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZTIN3tbb4taskE
  Calls: DBSclustering ... as.matrix -> loadNamespace -> library.dynam -> dyn.load
  Execution halted

Package: DatabionicSwarm
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘DatabionicSwarm.Rmd’ using rmarkdown
  Failed with error:  'unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so':
    /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZTIN3tbb4taskE'
  
  Quitting from lines 96-105 [unnamed-chunk-5] (DatabionicSwarm.Rmd)
  Error: processing vignette 'DatabionicSwarm.Rmd' failed with diagnostics:
  unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so':
    /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/parallelDist/libs/parallelDist.so: undefined symbol: _ZTIN3tbb4taskE
  --- failed re-building ‘DatabionicSwarm.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘DatabionicSwarm.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

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  See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘PosteriorBootstrap.Rmd’ using rmarkdown_notangle
  
  Quitting from lines 54-61 [unnamed-chunk-1] (PosteriorBootstrap.Rmd)
  Error: processing vignette 'PosteriorBootstrap.Rmd' failed with diagnostics:
  package or namespace load failed for 'rstan' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so':
    /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so: undefined symbol: _ZN3tbb8internal26task_scheduler_observer_v37observeEb
  --- failed re-building ‘PosteriorBootstrap.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘PosteriorBootstrap.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: PosteriorBootstrap
Check: tests
New result: ERROR
    Running ‘testthat.R’ [1s/1s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > testthat::test_check("PosteriorBootstrap")
    Loading required package: PosteriorBootstrap
    Welcome to PosteriorBootstrap, a parallel approach for adaptive non-parametric learning
    [ FAIL 1 | WARN 0 | SKIP 1 | PASS 31 ]
    
    ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
    • On CRAN (1): 'test_german_data.R:39:3'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test_anpl.R:5:1'): (code run outside of `test_that()`) ──────────────
    Error: package or namespace load failed for 'rstan' in dyn.load(file, DLLpath = DLLpath, ...):
     unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so':
      /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so: undefined symbol: _ZN3tbb8internal26task_scheduler_observer_v37observeEb
    Backtrace:
        ▆
     1. └─base::library("rstan") at test_anpl.R:5:1
     2.   └─base::tryCatch(...)
     3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
     4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
     5.         └─value[[3L]](cond)
    
    [ FAIL 1 | WARN 0 | SKIP 1 | PASS 31 ]
    Error: Test failures
    Execution halted

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Package: rstantools
Check: tests
New result: ERROR
    Running ‘testthat.R’ [2s/2s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(rstantools)
    This is rstantools version 2.4.0
    > 
    > foo <- function(x) {"test function"}
    > 
    > if (identical(Sys.getenv("TRAVIS"), "true")) {
    +   test_check("rstantools", filter = "methods")
    + } else {
    +   test_check("rstantools")
    + }
    Package: RStanTest
    Title: What the Package Does (One Line, Title Case)
    Version: 0.0.0.9000
    Authors@R (parsed):
        * First Last <first.last@example.com> [aut, cre]
    Description: What the package does (one paragraph).
    License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
        license
    Encoding: UTF-8
    Roxygen: list(markdown = TRUE)
    RoxygenNote: 7.3.2
    Package: RStanTest
    Title: What the Package Does (One Line, Title Case)
    Version: 0.0.0.9000
    Authors@R (parsed):
        * First Last <first.last@example.com> [aut, cre]
    Description: What the package does (one paragraph).
    License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
        license
    Encoding: UTF-8
    Roxygen: list(markdown = TRUE)
    RoxygenNote: 7.3.2
    [ FAIL 2 | WARN 0 | SKIP 0 | PASS 41 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-rstan_config.R:62:1'): (code run outside of `test_that()`) ─────
    Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so':
      /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so: undefined symbol: _ZN3tbb8internal26task_scheduler_observer_v37observeEb
    Backtrace:
        ▆
     1. ├─rstantools::rstan_config(pkg_dest_path) at test-rstan_config.R:62:1
     2. │ └─base::sapply(stan_files, .make_cc, pkgdir = pkgdir)
     3. │   └─base::lapply(X = X, FUN = FUN, ...)
     4. │     └─rstantools (local) FUN(X[[i]], ...)
     5. └─base::loadNamespace(x)
     6.   └─base::library.dynam(lib, package, package.lib)
     7.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
    ── Error ('test-rstan_create_package.R:89:3'): (code run outside of `test_that()`) ──
    Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so':
      /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/libs/rstan.so: undefined symbol: _ZN3tbb8internal26task_scheduler_observer_v37observeEb
    Backtrace:
        ▆
     1. ├─rstantools::rstan_config(pkg_dest_path) at test-rstan_create_package.R:89:3
     2. │ └─base::sapply(stan_files, .make_cc, pkgdir = pkgdir)
     3. │   └─base::lapply(X = X, FUN = FUN, ...)
     4. │     └─rstantools (local) FUN(X[[i]], ...)
     5. └─base::loadNamespace(x)
     6.   └─base::library.dynam(lib, package, package.lib)
     7.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
    
    [ FAIL 2 | WARN 0 | SKIP 0 | PASS 41 ]
    Error: Test failures
    Execution halted

Package: rts2
Check: package dependencies
New result: ERROR
  Package required but not available: ‘glmmrBase’
  
  Package suggested but not available for checking: ‘cmdstanr’
  
  See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
  manual.

Package: rxode2
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: scistreer
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: serosv
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: ssMousetrack
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: StanMoMo
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: surveil
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: survstan
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: thurstonianIRT
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: tipsae
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: tmbstan
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: trialr
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: TriDimRegression
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: truncnormbayes
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: tsnet
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: ubms
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: visit
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: walker
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: WhiteLabRt
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: winputall
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: zoid
Check: whether package can be installed
New result: ERROR
  Installation failed.