Package check result: OK

Changes to worse in reverse depends:

Package: demulticoder
Check: tests
New result: ERROR
    Running ‘testthat.R’ [3s/3s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > # This file is part of the standard setup for testthat.
    > # It is recommended that you do not modify it.
    > #
    > # Where should you do additional test configuration?
    > # Learn more about the roles of various files in:
    > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
    > # * https://testthat.r-lib.org/articles/special-files.html
    > 
    > library(testthat)
    > library(demulticoder)
    > 
    > test_check("demulticoder")
    cutadapt is not installed, skipping tests.
    cutadapt is not installed, skipping tests.
    cutadapt is not installed, skipping tests.
    cutadapt is not installed, skipping tests.
    Existing files found in the output directory. Overwriting existing files.
    Rows: 2 Columns: 25
    -- Column specification --------------------------------------------------------
    Delimiter: ","
    chr  (3): primer_name, forward, reverse
    dbl (18): minCutadaptlength, maxN, maxEE_forward, maxEE_reverse, truncLen_fo...
    lgl  (4): already_trimmed, count_all_samples, multithread, verbose
    
    i Use `spec()` to retrieve the full column specification for this data.
    i Specify the column types or set `show_col_types = FALSE` to quiet this message.
    Saving _problems/test_prepare_reads-2.R
    [ FAIL 1 | WARN 0 | SKIP 4 | PASS 0 ]
    
    ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
    • empty test (4): , , ,
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test_prepare_reads.R:2:3'): prepare_reads works correctly ───────────
    Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Biostrings/libs/Biostrings.so':
      /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Biostrings/libs/Biostrings.so: undefined symbol: SET_NAMED
    Backtrace:
        ▆
     1. ├─demulticoder::prepare_reads(...) at test_prepare_reads.R:2:3
     2. │ └─demulticoder:::orient_primers(primers_params_path)
     3. │   └─base::sapply(forward_primers$forward, function(x) toString(Biostrings::complement(Biostrings::DNAString(x))))
     4. │     └─base::lapply(X = X, FUN = FUN, ...)
     5. │       └─demulticoder (local) FUN(X[[i]], ...)
     6. │         └─base::toString(Biostrings::complement(Biostrings::DNAString(x)))
     7. └─base::loadNamespace(x)
     8.   └─base::library.dynam(lib, package, package.lib)
     9.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
    
    [ FAIL 1 | WARN 0 | SKIP 4 | PASS 0 ]
    Error:
    ! Test failures.
    Execution halted

Package: Rfast2
Check: whether package can be installed
New result: ERROR
  Installation failed.