downloading reverse dependencies ... downloading BiodiversityR_2.16-1.tar.gz ... ok downloading fingerPro_1.1.tar.gz ... ok downloading RcmdrPlugin.aRnova_0.0.5.tar.gz ... ok downloading RcmdrPlugin.BiclustGUI_1.1.3.1.tar.gz ... ok downloading RcmdrPlugin.BWS1_0.2-2.tar.gz ... ok downloading RcmdrPlugin.BWS2_0.2-2.tar.gz ... ok downloading RcmdrPlugin.BWS3_0.2-3.tar.gz ... ok downloading RcmdrPlugin.cpd_0.2.0.tar.gz ... ok downloading RcmdrPlugin.DCCV_0.1-5.tar.gz ... ok downloading RcmdrPlugin.DCE_0.2-3.tar.gz ... ok downloading RcmdrPlugin.depthTools_1.4.tar.gz ... ok downloading RcmdrPlugin.DoE_0.12-5.tar.gz ... ok downloading RcmdrPlugin.EACSPIR_0.2-3.tar.gz ... ok downloading RcmdrPlugin.EBM_1.0-10.tar.gz ... ok downloading RcmdrPlugin.EcoVirtual_1.0.tar.gz ... ok downloading RcmdrPlugin.Export_0.3-1.tar.gz ... ok downloading RcmdrPlugin.EZR_1.68.tar.gz ... ok downloading RcmdrPlugin.FactoMineR_1.8.tar.gz ... ok downloading RcmdrPlugin.GWRM_1.0.2.tar.gz ... ok downloading RcmdrPlugin.HH_1.1-51.tar.gz ... ok downloading RcmdrPlugin.KMggplot2_0.2-6.tar.gz ... ok downloading RcmdrPlugin.MA_0.0-2.tar.gz ... ok downloading RcmdrPlugin.MPAStats_1.2.2.tar.gz ... ok downloading RcmdrPlugin.NMBU_1.8.15.tar.gz ... ok downloading RcmdrPlugin.orloca_4.8.2.tar.gz ... ok downloading RcmdrPlugin.PcaRobust_1.1.4.tar.gz ... ok downloading RcmdrPlugin.RiskDemo_3.2.tar.gz ... ok downloading RcmdrPlugin.RMTCJags_1.0-2.tar.gz ... ok downloading RcmdrPlugin.ROC_1.0-19.tar.gz ... ok downloading RcmdrPlugin.sos_0.3-0.tar.gz ... ok downloading RcmdrPlugin.survival_1.3-2.tar.gz ... ok downloading RcmdrPlugin.TeachingDemos_1.2-0.tar.gz ... ok downloading RcmdrPlugin.TeachStat_1.1.3.tar.gz ... ok downloading RcmdrPlugin.temis_0.7.10.tar.gz ... ok downloading RcmdrPlugin.UCA_5.1-2.tar.gz ... ok downloading RcmdrPlugin.WorldFlora_1.3.tar.gz ... ok downloading HH_3.1-52.tar.gz ... ok downloading LabRS_0.1.0.tar.gz ... ok downloading relimp_1.0-5.tar.gz ... ok installing dependencies ‘aplpack’, ‘BcDiag’, ‘BiBitR’, ‘BicARE’, ‘blockCV’, ‘brant’, ‘compute.es’, ‘consort’, ‘cpd’, ‘currentSurvival’, ‘DCchoice’, ‘demography’, ‘depthTools’, ‘DoE.wrapper’, ‘EcoVirtual’, ‘ENMeval’, ‘envirem’, ‘fabia’, ‘FrF2.catlg128’, ‘ftsa’, ‘GWRM’, ‘iBBiG’, ‘IndexNumR’, ‘IQCC’, ‘MAd’, ‘maxlike’, ‘maxnet’, ‘metatest’, ‘microplot’, ‘mixlm’, ‘orloca’, ‘orloca.es’, ‘phia’, ‘qcc’, ‘qicharts2’, ‘randtests’, ‘Rcmdr’, ‘RcmdrPlugin.HH’, ‘red’, ‘ResourceSelection’, ‘Rlof’, ‘ROpenOffice’, ‘rqubic’, ‘s4vd’, ‘sos’, ‘superbiclust’, ‘support.BWS’, ‘support.BWS2’, ‘support.BWS3’, ‘support.CEs’, ‘survRM2’, ‘swimplot’, ‘tm.plugin.alceste’, ‘tm.plugin.europresse’, ‘tm.plugin.factiva’, ‘tm.plugin.lexisnexis’, ‘twitteR’, ‘vegan3d’, ‘WorldFlora’ Warning: packages ‘BicARE’, ‘ROpenOffice’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘rebird’, ‘rvertnet’, ‘ridigbio’, ‘spocc’, ‘BIEN’, ‘hypervolume’, ‘perm’, ‘Icens’, ‘rangeModelMetadata’, ‘BAT’, ‘predicts’, ‘palinsol’, ‘simex’, ‘dgof’, ‘interval’, ‘HMDHFDplus’, ‘pdfCluster’, ‘evgam’, ‘ROOPSD’ begin installing package ‘rebird’ begin installing package ‘rvertnet’ begin installing package ‘BIEN’ begin installing package ‘hypervolume’ begin installing package ‘ridigbio’ begin installing package ‘perm’ begin installing package ‘Icens’ begin installing package ‘predicts’ begin installing package ‘palinsol’ begin installing package ‘simex’ begin installing package ‘dgof’ begin installing package ‘HMDHFDplus’ begin installing package ‘pdfCluster’ begin installing package ‘evgam’ begin installing package ‘ROOPSD’ begin installing package ‘aplpack’ begin installing package ‘vegan3d’ begin installing package ‘maxlike’ begin installing package ‘Rlof’ begin installing package ‘maxnet’ begin installing package ‘blockCV’ begin installing package ‘fabia’ begin installing package ‘iBBiG’ begin installing package ‘s4vd’ begin installing package ‘BiBitR’ begin installing package ‘rqubic’ begin installing package ‘support.BWS’ begin installing package ‘support.BWS2’ * installing *source* package ‘maxnet’ ... ** package ‘maxnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maxnet) begin installing package ‘support.BWS3’ * installing *source* package ‘Rlof’ ... ** package ‘Rlof’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTRvSss/R.INSTALL207513360ce8b0/Rlof/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distance.c -o distance.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Rlof.so distance.o -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTRvSss/R.INSTALL207513360ce8b0/Rlof/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rlof/00new/Rlof/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rlof) begin installing package ‘depthTools’ * installing *source* package ‘support.BWS2’ ... ** package ‘support.BWS2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (support.BWS2) begin installing package ‘DoE.wrapper’ * installing *source* package ‘perm’ ... ** package ‘perm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (perm) begin installing package ‘FrF2.catlg128’ * installing *source* package ‘dgof’ ... ** package ‘dgof’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpItJJlK/R.INSTALL2074ff11eff8a9/dgof/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ks.c -o ks.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o dgof.so init.o ks.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpItJJlK/R.INSTALL2074ff11eff8a9/dgof/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dgof/00new/dgof/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dgof) begin installing package ‘EcoVirtual’ * installing *source* package ‘ridigbio’ ... ** package ‘ridigbio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ridigbio) begin installing package ‘brant’ * installing *source* package ‘support.BWS’ ... ** package ‘support.BWS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (support.BWS) begin installing package ‘consort’ * installing *source* package ‘simex’ ... ** package ‘simex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simex) begin installing package ‘metatest’ * installing *source* package ‘palinsol’ ... ** package ‘palinsol’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (palinsol) begin installing package ‘survRM2’ * installing *source* package ‘support.BWS3’ ... ** package ‘support.BWS3’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (support.BWS3) begin installing package ‘swimplot’ * installing *source* package ‘depthTools’ ... ** package ‘depthTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (depthTools) begin installing package ‘currentSurvival’ * installing *source* package ‘rebird’ ... ** package ‘rebird’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebird) begin installing package ‘GWRM’ * installing *source* package ‘metatest’ ... ** package ‘metatest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metatest) begin installing package ‘MAd’ * installing *source* package ‘rvertnet’ ... ** package ‘rvertnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvertnet) begin installing package ‘compute.es’ * installing *source* package ‘Icens’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Icens) begin installing package ‘mixlm’ * installing *source* package ‘pdfCluster’ ... ** package ‘pdfCluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8zXGI4/R.INSTALL2075056623e65c/pdfCluster/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kepdf.c -o kepdf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c macon.c -o macon.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nc.c -o nc.o nc.c:17:27: warning: ‘CEntries’ defined but not used [-Wunused-const-variable=] 17 | static const R_CMethodDef CEntries[] = { | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdfCluster_init.c -o pdfCluster_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o pdfCluster.so kepdf.o macon.o nc.o pdfCluster_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8zXGI4/R.INSTALL2075056623e65c/pdfCluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pdfCluster/00new/pdfCluster/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pdfCluster) begin installing package ‘phia’ * installing *source* package ‘swimplot’ ... ** package ‘swimplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (swimplot) begin installing package ‘orloca’ * installing *source* package ‘HMDHFDplus’ ... ** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HMDHFDplus) begin installing package ‘ResourceSelection’ * installing *source* package ‘consort’ ... ** package ‘consort’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (consort) begin installing package ‘sos’ * installing *source* package ‘EcoVirtual’ ... ** package ‘EcoVirtual’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EcoVirtual) begin installing package ‘IndexNumR’ * installing *source* package ‘GWRM’ ... ** package ‘GWRM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GWRM) begin installing package ‘randtests’ * installing *source* package ‘brant’ ... ** package ‘brant’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brant) begin installing package ‘tm.plugin.factiva’ * installing *source* package ‘DoE.wrapper’ ... ** package ‘DoE.wrapper’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DoE.wrapper) begin installing package ‘tm.plugin.lexisnexis’ * installing *source* package ‘vegan3d’ ... ** package ‘vegan3d’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vegan3d) begin installing package ‘tm.plugin.europresse’ * installing *source* package ‘BiBitR’ ... ** package ‘BiBitR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiBitR) begin installing package ‘tm.plugin.alceste’ * installing *source* package ‘survRM2’ ... ** package ‘survRM2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survRM2) begin installing package ‘twitteR’ * installing *source* package ‘sos’ ... ** package ‘sos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sos) begin installing package ‘qcc’ * installing *source* package ‘iBBiG’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF3d4QZ/R.INSTALL2075204d9bce23/iBBiG/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_iBBiG.c -o R_init_iBBiG.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iBBiG.c -o iBBiG.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o iBBiG.so R_init_iBBiG.o iBBiG.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF3d4QZ/R.INSTALL2075204d9bce23/iBBiG/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-iBBiG/00new/iBBiG/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iBBiG) begin installing package ‘qicharts2’ * installing *source* package ‘compute.es’ ... ** package ‘compute.es’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (compute.es) begin installing package ‘WorldFlora’ * installing *source* package ‘MAd’ ... ** package ‘MAd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MAd) begin installing package ‘microplot’ * installing *source* package ‘randtests’ ... ** package ‘randtests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randtests) begin installing package ‘Rcmdr’ * installing *source* package ‘s4vd’ ... ** package ‘s4vd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (s4vd) begin installing package ‘spocc’ * installing *source* package ‘ROOPSD’ ... ** package ‘ROOPSD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROOPSD) begin installing package ‘interval’ * installing *source* package ‘rqubic’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuINDCs/R.INSTALL20752532e1d5b9/rqubic/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bicluster.c -o bicluster.o bicluster.c: In function ‘seed_intersect_r’: bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 354 | if (flag=ss) (*m_cnt)++; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discretize.c -o discretize.o In file included from discretize.c:9: rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable] 62 | static const char *MINCOL_ATT_NAME="minimumCol"; | ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable] 61 | static const char *EDGELIST_ATT_NAME="edgelist"; | ^~~~~~~~~~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fib.c -o fib.o fib.c: In function ‘fh_makekeyheap’: fib.c:170:22: warning: overflow in conversion from ‘int’ to ‘signed char:1’ changes value from ‘1’ to ‘-1’ [-Woverflow] 170 | n->fh_keys = 1; | ^ In file included from fib.c:35: rqubic.h: At top level: rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable] 62 | static const char *MINCOL_ATT_NAME="minimumCol"; | ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable] 61 | static const char *EDGELIST_ATT_NAME="edgelist"; | ^~~~~~~~~~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c graph.c -o graph.o In function ‘compare_edges’, inlined from ‘fh_insert_fixed’ at graph.c:41:9, inlined from ‘generate_sorted_seeds’ at graph.c:147:7: graph.c:31:13: warning: array subscript ‘struct Edge[0]’ is partly outside array bounds of ‘struct Edge[0]’ [-Warray-bounds=] 31 | const int score_a = ((pEdge)a)->score; | ^~~~~~~ graph.c: In function ‘generate_sorted_seeds’: graph.c:131:9: note: object ‘_cur_min’ of size 8 131 | pEdge _cur_min = &__cur_min; | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rqubic.c -o rqubic.o In file included from rqubic.c:5: rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable] 62 | static const char *MINCOL_ATT_NAME="minimumCol"; | ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable] 61 | static const char *EDGELIST_ATT_NAME="edgelist"; | ^~~~~~~~~~~~~~~~~ gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuINDCs/R.INSTALL20752532e1d5b9/rqubic/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rqubic/00new/rqubic/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rqubic) begin installing package ‘envirem’ * installing *source* package ‘tm.plugin.lexisnexis’ ... ** package ‘tm.plugin.lexisnexis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tm.plugin.lexisnexis) begin installing package ‘support.CEs’ * installing *source* package ‘orloca’ ... ** package ‘orloca’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"loca.p","data.frame"’: no definition for class “loca.p” in method for ‘coerce’ with signature ‘"data.frame","loca.p"’: no definition for class “loca.p” in method for ‘coerce’ with signature ‘"loca.p","matrix"’: no definition for class “loca.p” in method for ‘coerce’ with signature ‘"matrix","loca.p"’: no definition for class “loca.p” in method for ‘distsum’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsumgra’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsuml2’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsuml2gra’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsuml2min’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsumlp’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsumlpgra’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsumlpmin’ with signature ‘"loca.p"’: no definition for class “loca.p” in method for ‘distsummin’ with signature ‘"loca.p"’: no definition for class “loca.p” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orloca) begin installing package ‘cpd’ * installing *source* package ‘tm.plugin.factiva’ ... ** package ‘tm.plugin.factiva’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tm.plugin.factiva) begin installing package ‘orloca.es’ * installing *source* package ‘tm.plugin.alceste’ ... ** package ‘tm.plugin.alceste’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tm.plugin.alceste) * installing *source* package ‘tm.plugin.europresse’ ... ** package ‘tm.plugin.europresse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tm.plugin.europresse) * installing *source* package ‘IndexNumR’ ... ** package ‘IndexNumR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IndexNumR) * installing *source* package ‘currentSurvival’ ... ** package ‘currentSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (currentSurvival) * installing *source* package ‘blockCV’ ... ** package ‘blockCV’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0q5P4O/R.INSTALL207517553a96ae/blockCV/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nndm.cpp -o nndm.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o blockCV.so RcppExports.o nndm.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0q5P4O/R.INSTALL207517553a96ae/blockCV/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-blockCV/00new/blockCV/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blockCV) * installing *source* package ‘WorldFlora’ ... ** package ‘WorldFlora’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WorldFlora) * installing *source* package ‘ResourceSelection’ ... ** package ‘ResourceSelection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResourceSelection) * installing *source* package ‘fabia’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp939kql/R.INSTALL20751e3f5c2faf/fabia/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fabiac.c -o fabiac.o fabiac.c:3796:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 3796 | int main() { | ^~~~ fabiac.c: In function ‘readSpfabicResult’: fabiac.c:3588:17: warning: argument 1 null where non-null expected [-Wnonnull] 3588 | fclose (pFile); | ^~~~~~~~~~~~~~ In file included from fabiac.c:2: /usr/include/stdio.h:184:12: note: in a call to function ‘fclose’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o fabia.so fabiac.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp939kql/R.INSTALL20751e3f5c2faf/fabia/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fabia/00new/fabia/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fabia) begin installing package ‘superbiclust’ begin installing package ‘BcDiag’ * installing *source* package ‘phia’ ... ** package ‘phia’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phia) * installing *source* package ‘orloca.es’ ... ** package ‘orloca.es’ successfully unpacked and MD5 sums checked ** using staged installation ** demo ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orloca.es) * installing *source* package ‘support.CEs’ ... ** package ‘support.CEs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (support.CEs) * installing *source* package ‘qcc’ ... ** package ‘qcc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qcc) begin installing package ‘IQCC’ * installing *source* package ‘qicharts2’ ... ** package ‘qicharts2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qicharts2) * installing *source* package ‘cpd’ ... ** package ‘cpd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpd) * installing *source* package ‘mixlm’ ... ** package ‘mixlm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixlm) * installing *source* package ‘twitteR’ ... ** package ‘twitteR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twitteR) * installing *source* package ‘IQCC’ ... ** package ‘IQCC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IQCC) * installing *source* package ‘BcDiag’ ... ** package ‘BcDiag’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BcDiag) * installing *source* package ‘interval’ ... ** package ‘interval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interval) begin installing package ‘DCchoice’ * installing *source* package ‘spocc’ ... ** package ‘spocc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spocc) * installing *source* package ‘aplpack’ ... ** package ‘aplpack’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aplpack) * installing *source* package ‘microplot’ ... ** package ‘microplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (microplot) * installing *source* package ‘maxlike’ ... ** package ‘maxlike’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maxlike) * installing *source* package ‘superbiclust’ ... ** package ‘superbiclust’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (superbiclust) * installing *source* package ‘predicts’ ... ** package ‘predicts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (predicts) * installing *source* package ‘DCchoice’ ... ** package ‘DCchoice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DCchoice) * installing *source* package ‘BIEN’ ... ** package ‘BIEN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BIEN) begin installing package ‘rangeModelMetadata’ * installing *source* package ‘envirem’ ... ** package ‘envirem’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (envirem) * installing *source* package ‘Rcmdr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcmdr) begin installing package ‘RcmdrPlugin.HH’ * installing *source* package ‘hypervolume’ ... ** package ‘hypervolume’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxNfyjN/R.INSTALL2074e04810d3f2/hypervolume/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convert.cpp -o convert.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastPdist2.cpp -o fastPdist2.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o hypervolume.so RcppExports.o convert.o fastPdist2.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxNfyjN/R.INSTALL2074e04810d3f2/hypervolume/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hypervolume/00new/hypervolume/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hypervolume) begin installing package ‘BAT’ * installing *source* package ‘rangeModelMetadata’ ... ** package ‘rangeModelMetadata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rangeModelMetadata) begin installing package ‘ENMeval’ * installing *source* package ‘RcmdrPlugin.HH’ ... ** package ‘RcmdrPlugin.HH’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcmdrPlugin.HH) * installing *source* package ‘FrF2.catlg128’ ... ** package ‘FrF2.catlg128’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FrF2.catlg128) * installing *source* package ‘ENMeval’ ... ** package ‘ENMeval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ENMeval) * installing *source* package ‘BAT’ ... ** package ‘BAT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAT) begin installing package ‘red’ * installing *source* package ‘evgam’ ... ** package ‘evgam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRmPhjJ/R.INSTALL20750b7644d27c/evgam/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aldC.cpp -o aldC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exiC.cpp -o exiC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c expC.cpp -o expC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c extras.cpp -o extras.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gaussC.cpp -o gaussC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gevC.cpp -o gevC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gevaggC.cpp -o gevaggC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gevcC.cpp -o gevcC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gpdC.cpp -o gpdC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gpdcC.cpp -o gpdcC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gradHess.cpp -o gradHess.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ppC.cpp -o ppC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ppexiC.cpp -o ppexiC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c weibC.cpp -o weibC.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o evgam.so RcppExports.o aldC.o exiC.o expC.o extras.o gaussC.o gevC.o gevaggC.o gevcC.o gpdC.o gpdcC.o gradHess.o ppC.o ppexiC.o weibC.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRmPhjJ/R.INSTALL20750b7644d27c/evgam/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evgam/00new/evgam/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evgam) begin installing package ‘ftsa’ * installing *source* package ‘red’ ... ** package ‘red’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (red) * installing *source* package ‘ftsa’ ... ** package ‘ftsa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ftsa) begin installing package ‘demography’ * installing *source* package ‘demography’ ... ** package ‘demography’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (demography) checking Rcmdr_2.9-5.tar.gz ... checking BiodiversityR_2.16-1.tar.gz ... checking fingerPro_1.1.tar.gz ... checking RcmdrPlugin.BiclustGUI_1.1.3.1.tar.gz ... checking RcmdrPlugin.aRnova_0.0.5.tar.gz ... checking RcmdrPlugin.BWS1_0.2-2.tar.gz ... checking RcmdrPlugin.BWS2_0.2-2.tar.gz ... checking RcmdrPlugin.BWS3_0.2-3.tar.gz ... checking RcmdrPlugin.cpd_0.2.0.tar.gz ... checking RcmdrPlugin.DCCV_0.1-5.tar.gz ... checking RcmdrPlugin.DCE_0.2-3.tar.gz ... checking RcmdrPlugin.depthTools_1.4.tar.gz ... checking RcmdrPlugin.DoE_0.12-5.tar.gz ... checking RcmdrPlugin.EACSPIR_0.2-3.tar.gz ... checking RcmdrPlugin.EBM_1.0-10.tar.gz ... checking RcmdrPlugin.EcoVirtual_1.0.tar.gz ... checking RcmdrPlugin.Export_0.3-1.tar.gz ... checking RcmdrPlugin.EZR_1.68.tar.gz ... checking RcmdrPlugin.FactoMineR_1.8.tar.gz ... checking RcmdrPlugin.GWRM_1.0.2.tar.gz ... checking RcmdrPlugin.HH_1.1-51.tar.gz ... checking RcmdrPlugin.KMggplot2_0.2-6.tar.gz ... checking RcmdrPlugin.MA_0.0-2.tar.gz ... checking RcmdrPlugin.MPAStats_1.2.2.tar.gz ... checking RcmdrPlugin.NMBU_1.8.15.tar.gz ... checking RcmdrPlugin.orloca_4.8.2.tar.gz ... checking RcmdrPlugin.PcaRobust_1.1.4.tar.gz ... checking RcmdrPlugin.RiskDemo_3.2.tar.gz ... checking RcmdrPlugin.TeachingDemos_1.2-0.tar.gz ... checking relimp_1.0-5.tar.gz ... checking HH_3.1-52.tar.gz ... checking RcmdrPlugin.WorldFlora_1.3.tar.gz ... checking RcmdrPlugin.temis_0.7.10.tar.gz ... checking RcmdrPlugin.UCA_5.1-2.tar.gz ... checking LabRS_0.1.0.tar.gz ... checking RcmdrPlugin.survival_1.3-2.tar.gz ... checking RcmdrPlugin.TeachStat_1.1.3.tar.gz ... checking RcmdrPlugin.sos_0.3-0.tar.gz ... checking RcmdrPlugin.RMTCJags_1.0-2.tar.gz ... checking RcmdrPlugin.ROC_1.0-19.tar.gz ... Depends: Package: Rcmdr Depends: R (>= 3.5.0), grDevices, graphics, methods, stats, utils, splines, RcmdrMisc (>= 2.9-1), car (>= 3.1-0), effects (>= 4.0-3) Imports: tcltk, tcltk2 (>= 1.2-6), abind, relimp (>= 1.0-5), lme4, tools Timings: user system elapsed Rcmdr 198.732 30.406 230.065 Results: Check status summary: ERROR NOTE OK Source packages 0 1 0 Reverse depends 1 14 24 Check results summary: Rcmdr ... NOTE * checking CRAN incoming feasibility ... [8s/9s] NOTE rdepends_BiodiversityR ... OK rdepends_fingerPro ... OK rdepends_HH ... NOTE * checking Rd cross-references ... NOTE rdepends_LabRS ... NOTE * checking for non-standard things in the check directory ... NOTE rdepends_RcmdrPlugin.aRnova ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_RcmdrPlugin.BiclustGUI ... ERROR * checking package dependencies ... ERROR rdepends_RcmdrPlugin.BWS1 ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.BWS2 ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.BWS3 ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.cpd ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.DCCV ... OK rdepends_RcmdrPlugin.DCE ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.depthTools ... OK rdepends_RcmdrPlugin.DoE ... NOTE * checking Rd cross-references ... NOTE * checking Rd \usage sections ... NOTE rdepends_RcmdrPlugin.EACSPIR ... OK rdepends_RcmdrPlugin.EBM ... OK rdepends_RcmdrPlugin.EcoVirtual ... OK rdepends_RcmdrPlugin.Export ... OK rdepends_RcmdrPlugin.EZR ... OK rdepends_RcmdrPlugin.FactoMineR ... OK rdepends_RcmdrPlugin.GWRM ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.HH ... OK rdepends_RcmdrPlugin.KMggplot2 ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.MA ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_RcmdrPlugin.MPAStats ... OK rdepends_RcmdrPlugin.NMBU ... OK rdepends_RcmdrPlugin.orloca ... OK rdepends_RcmdrPlugin.PcaRobust ... OK rdepends_RcmdrPlugin.RiskDemo ... OK rdepends_RcmdrPlugin.RMTCJags ... OK rdepends_RcmdrPlugin.ROC ... OK rdepends_RcmdrPlugin.sos ... OK rdepends_RcmdrPlugin.survival ... OK rdepends_RcmdrPlugin.TeachingDemos ... OK rdepends_RcmdrPlugin.TeachStat ... NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.temis ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_RcmdrPlugin.UCA ... OK rdepends_RcmdrPlugin.WorldFlora ... OK rdepends_relimp ... OK