* using log directory 'd:/RCompile/CRANincoming/R-devel/RclusTool.Rcheck' * using R Under development (unstable) (2024-02-26 r85990 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'RclusTool/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RclusTool' version '0.91.6' * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: 'Pierre-Alexandre Hebert ' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'RclusTool' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [29s] NOTE Found if() conditions comparing class() to string: File 'RclusTool/R/sampleCompute.R': if (class(object) == "lm") ... File 'RclusTool/R/sampleCompute.R': if (class(object) == "lda") ... File 'RclusTool/R/sampleCompute.R': if (class(object) == "mda") ... Use inherits() (or maybe is()) instead. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in 'RclusTool-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: abdPlot > ### Title: Abundances barplot > ### Aliases: abdPlot > ### Keywords: internal > > ### ** Examples > > dat <- rbind(matrix(rnorm(100, mean = 2, sd = 0.3), ncol = 2), + matrix(rnorm(100, mean = 4, sd = 0.3), ncol = 2), + matrix(rnorm(100, mean = 6, sd = 0.3), ncol = 2)) > colnames(dat) <- c("x","y") > tf <- tempfile() > write.table(dat, tf, sep=",", dec=".") > > x <- importSample(file.features=tf, dir.save=tempdir()) Import Features... Search previous results... No previous results to load! Sample size = 150 > > x <- computeUnSupervised(x, K=3, method.name='K-means') K-means computing: method Quick Error in data.sample$features[[space]] : missing subscript Calls: computeUnSupervised -> clusterDensity Execution halted * checking PDF version of manual ... [16s] OK * checking HTML version of manual ... [16s] OK * DONE Status: 1 ERROR, 1 NOTE