* using log directory ‘/srv/hornik/tmp/CRAN_pretest/RadEro.Rcheck’
* using R Under development (unstable) (2024-10-01 r87205)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘RadEro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadEro’ version ‘1.0.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Arturo Catala <acatalae@gmail.com>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadEro’ can be installed ... [8s/8s] OK
* used C compiler: ‘Debian clang version 18.1.8 (11)’
* used C++ compiler: ‘Debian clang version 18.1.8 (11)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] NOTE
plot: no visible binding for global variable ‘x’
plot: no visible binding for global variable ‘y’
plot: no visible binding for global variable ‘depth1’
plot: no visible binding for global variable ‘num2’
plot: no visible binding for global variable ‘midPROF’
plot: no visible binding for global variable ‘invCS’
Undefined global functions or variables:
  depth1 invCS midPROF num2 x y
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... WARNING
File ‘RadEro/libs/RadEro.so’:
  Found ‘__vprintf_chk’, possibly from ‘vprintf’ (C)
    Object: ‘model.o’
  Found ‘__vsprintf_chk’, possibly from ‘vsprintf’ (C)
    Object: ‘model.o’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘model.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... [1s/1s] ERROR
Running examples in ‘RadEro-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RadEro
> ### Title: RadEro: Physically Based Compartmental Model for 137Cs Analysis
> ###   and Soil Redistribution Rates Estimation
> ### Aliases: RadEro-package RadEro
> ### Keywords: internal
> 
> ### ** Examples
> 
> # Example workflow for running the RadEro model:
> 
> # Step 1: Define your working directory
> directory <- getwd()  # You can change this to any other directory if needed
> 
> # Step 2: Copy example files (.csv and .js) from the package to the working directory
> RadEro_example(directory)
Copied: input-data_example.csv to /srv/hornik/tmp/CRAN_pretest/RadEro.Rcheck
Copied: input-config_example.js to /srv/hornik/tmp/CRAN_pretest/RadEro.Rcheck
> # Those files can be used as templates for your own projects.
> 
> # Step 3: Execute the model with the example files
> RadEro_run(data = "input-data_example.csv", config = "input-config_example.js")
Starting RadEro_run...

 Current directory: /srv/hornik/tmp/CRAN_pretest/RadEro.Rcheck 
 
 ---- Simulating profile: profile1 --------------
*** buffer overflow detected ***: terminated
Aborted
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘input-config_example.js’ ‘input-data_example.csv’ ‘results’ ‘temp’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 3 NOTEs