* using log directory ‘/srv/hornik/tmp/CRAN_pretest/RadEro.Rcheck’
* using R Under development (unstable) (2024-09-25 r87194)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘RadEro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadEro’ version ‘1.0.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Arturo Catala <acatalae@gmail.com>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory ‘RadEro/src’ contains apparent object files/libraries
  radimod.dll
Object files/libraries should not be included in a source package.

Subdirectory ‘src’ contains:
  radimod.dll
These are unlikely file names for src files.
* checking if there is a namespace ... OK
* checking for executable files ... WARNING
Found the following executable file:
  src/radimod.dll
Source packages should not contain undeclared executable files.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadEro’ can be installed ... [8s/8s] OK
* used C compiler: ‘Debian clang version 18.1.8 (11)’
* used C++ compiler: ‘Debian clang version 18.1.8 (11)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘RadEro.Rproj’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] NOTE
RadEro_run: no visible global function definition for ‘read.table’
RadEro_run: no visible global function definition for ‘write.table’
plot: no visible global function definition for ‘read.table’
plot: no visible global function definition for ‘tail’
plot: no visible global function definition for ‘stepfun’
plot: no visible global function definition for ‘head’
plot: no visible binding for global variable ‘x’
plot: no visible binding for global variable ‘y’
plot: no visible binding for global variable ‘depth1’
plot: no visible binding for global variable ‘num2’
plot: no visible binding for global variable ‘midPROF’
plot: no visible binding for global variable ‘invCS’
resample_config: no visible global function definition for ‘tail’
resample_data: no visible global function definition for ‘tail’
resample_data: no visible global function definition for ‘head’
resample_data: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  depth1 head invCS midPROF num2 read.table stepfun tail write.table x
  y
Consider adding
  importFrom("stats", "stepfun")
  importFrom("utils", "head", "read.table", "tail", "write.table")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... WARNING
File ‘RadEro/libs/RadEro.so’:
  Found ‘__vprintf_chk’, possibly from ‘vprintf’ (C)
    Object: ‘model.o’
  Found ‘__vsprintf_chk’, possibly from ‘vsprintf’ (C)
    Objects: ‘cJSON.o’, ‘model.o’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘model.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... [7s/7s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
RadEro 5.213  0.055   5.304
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘input-config_example.js’ ‘input-data_example.csv’ ‘results’ ‘temp’
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 WARNINGs, 5 NOTEs