* using log directory 'd:/RCompile/CRANincoming/R-devel/RadEro.Rcheck'
* using R Under development (unstable) (2024-09-18 r87177 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'RadEro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RadEro' version '1.0.3'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Arturo Catala <acatalae@gmail.com>'

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RadEro' can be installed ... WARNING
Found the following significant warnings:
  cJSON.h:83:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.h:86:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.h:88:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.h:92:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.h:93:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:37:13: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:73:15: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:502:8: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:503:8: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:504:8: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:508:8: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  cJSON.c:509:8: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  defs.h:34:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  model.c:38:5: warning: function declaration isn't a prototype [-Wstrict-prototypes]
See 'd:/RCompile/CRANincoming/R-devel/RadEro.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'RadEro.Rproj'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] NOTE
RadEro_run: no visible global function definition for 'read.table'
RadEro_run: no visible global function definition for 'write.table'
plot: no visible global function definition for 'read.table'
plot: no visible global function definition for 'tail'
plot: no visible global function definition for 'stepfun'
plot: no visible global function definition for 'head'
plot: no visible binding for global variable 'x'
plot: no visible binding for global variable 'y'
plot: no visible binding for global variable 'depth1'
plot: no visible binding for global variable 'num2'
plot: no visible binding for global variable 'midPROF'
plot: no visible binding for global variable 'invCS'
resample_config: no visible global function definition for 'tail'
resample_data: no visible global function definition for 'tail'
resample_data: no visible global function definition for 'head'
resample_data: no visible global function definition for 'write.table'
Undefined global functions or variables:
  depth1 head invCS midPROF num2 read.table stepfun tail write.table x
  y
Consider adding
  importFrom("stats", "stepfun")
  importFrom("utils", "head", "read.table", "tail", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  'input-data_example'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'plot.Rd'
  'data1' 'data2' 'dir1' 'dir2' 'AxisMaxValue' 'cell_value'

Undocumented arguments in Rd file 'resample_config.Rd'
  'data2' 'config1' 'dir1'

Undocumented arguments in Rd file 'resample_data.Rd'
  'data2' 'dir1'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'input-config_example.js'
Please use e.g. 'inst/extdata' for non-R data files

* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [11s] ERROR
Running examples in 'RadEro-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RadEro_example
> ### Title: Copy Example Files from Package Data Directory to a Specified
> ###   Directory
> ### Aliases: RadEro_example
> 
> ### ** Examples
> 
> # Example of how to use this function:
> # Copy files to the current working directory
> copy_example_files(getwd())
Error in copy_example_files(getwd()) : 
  could not find function "copy_example_files"
Execution halted
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 4 WARNINGs, 3 NOTEs