* installing *source* package ‘Racmacs’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (11)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Racmacs_wrappers.cpp -o Racmacs_wrappers.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Racmacs_wrappers_antigens.cpp -o Racmacs_wrappers_antigens.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Racmacs_wrappers_optimizations.cpp -o Racmacs_wrappers_optimizations.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Racmacs_wrappers_plotspec.cpp -o Racmacs_wrappers_plotspec.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Racmacs_wrappers_sera.cpp -o Racmacs_wrappers_sera.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_bootstrap.cpp -o ac_bootstrap.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_dimension_test.cpp -o ac_dimension_test.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_errorlines.cpp -o ac_errorlines.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_hemi_test.cpp -o ac_hemi_test.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_matching.cpp -o ac_matching.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_merge.cpp -o ac_merge.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_move_trapped_points.cpp -o ac_move_trapped_points.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_optim_map_stress.cpp -o ac_optim_map_stress.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_optimization.cpp -o ac_optimization.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_optimize_ag_reactivity.cpp -o ac_optimize_ag_reactivity.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_stress.cpp -o ac_stress.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_stress_blobs.cpp -o ac_stress_blobs.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_titers.cpp -o ac_titers.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ac_utils.cpp -o ac_utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c acmap_map.cpp -o acmap_map.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c acmap_optimization.cpp -o acmap_optimization.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c acmap_point.cpp -o acmap_point.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c acmap_titers.cpp -o acmap_titers.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c json_assert.cpp -o json_assert.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c json_read_to_acmap.cpp -o json_read_to_acmap.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c json_write_from_acmap.cpp -o json_write_from_acmap.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c procrustes.cpp -o procrustes.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils_error.cpp -o utils_error.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils_euc_dist.cpp -o utils_euc_dist.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils_geometry.cpp -o utils_geometry.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils_interpolation.cpp -o utils_interpolation.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppEnsmallen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils_transformation.cpp -o utils_transformation.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Racmacs.so Racmacs_wrappers.o Racmacs_wrappers_antigens.o Racmacs_wrappers_optimizations.o Racmacs_wrappers_plotspec.o Racmacs_wrappers_sera.o RcppExports.o ac_bootstrap.o ac_dimension_test.o ac_errorlines.o ac_hemi_test.o ac_matching.o ac_merge.o ac_move_trapped_points.o ac_optim_map_stress.o ac_optimization.o ac_optimize_ag_reactivity.o ac_stress.o ac_stress_blobs.o ac_titers.o ac_utils.o acmap_map.o acmap_optimization.o acmap_point.o acmap_titers.o json_assert.o json_read_to_acmap.o json_write_from_acmap.o procrustes.o utils.o utils_error.o utils_euc_dist.o utils_geometry.o utils_interpolation.o utils_transformation.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN/Racmacs.Rcheck/00LOCK-Racmacs/00new/Racmacs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Racmacs)