R Under development (unstable) (2025-06-06 r88283 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(RZooRoH)
> 
> test_check("RZooRoH")
[1] "Number of positions in original file ::"
[2] "14831"                                  
[1] "Number of positions after MAF filtering  ::"
[2] "14831"                                      
[1] "Number of positions in original file ::"
[2] "14831"                                  
[1] "Number of positions after MAF filtering  ::"
[2] "11371"                                      
[1] "Number of positions in original file ::"
[2] "10000"                                  
[1] "Number of positions after MAF filtering  ::"
[2] "9598"                                       
[1] "Number of positions in original file ::"
[2] "1000"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "1000"                                       
[1] "Number of positions in original file ::"
[2] "1000"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "1000"                                       
[1] "Number of positions in original file ::"
[2] "1000"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "1000"                                       
[1] "Number of positions in original file ::"
[2] "1000"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "1000"                                       
[1] "Number of positions in original file ::"
[2] "6370"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "6370"                                       
final  value 6127.228984 
converged
[1] "Number of positions in original file ::"
[2] "6370"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "6370"                                       
  Nelder-Mead direct search function minimizer
function value for initial parameters = 6150.251745
  Scaled convergence tolerance is 9.16459e-05
Stepsize computed as 0.459512
BUILD              3 6150.251745 6147.589741
EXTENSION          5 6148.024244 6141.714123
LO-REDUCTION       7 6147.589741 6141.714123
EXTENSION          9 6141.763985 6129.142208
LO-REDUCTION      11 6141.714123 6129.142208
LO-REDUCTION      13 6130.760022 6128.143499
LO-REDUCTION      15 6129.142208 6127.738319
HI-REDUCTION      17 6128.143499 6127.613612
HI-REDUCTION      19 6127.738319 6127.257206
LO-REDUCTION      21 6127.613612 6127.257206
HI-REDUCTION      23 6127.391712 6127.257206
LO-REDUCTION      25 6127.348366 6127.235084
HI-REDUCTION      27 6127.257206 6127.235084
HI-REDUCTION      29 6127.248864 6127.230681
HI-REDUCTION      31 6127.235084 6127.230681
HI-REDUCTION      33 6127.233216 6127.230457
HI-REDUCTION      35 6127.230681 6127.229760
HI-REDUCTION      37 6127.230457 6127.229058
LO-REDUCTION      39 6127.229760 6127.229058
HI-REDUCTION      41 6127.229156 6127.229058
HI-REDUCTION      43 6127.229133 6127.229022
Exiting from Nelder Mead minimizer
    45 function evaluations used
  Nelder-Mead direct search function minimizer
function value for initial parameters = 5771.954769
  Scaled convergence tolerance is 8.60088e-05
Stepsize computed as 0.459512
BUILD              3 5774.072032 5770.258735
EXTENSION          5 5771.954769 5769.926988
REFLECTION         7 5770.258735 5768.639992
HI-REDUCTION       9 5769.926988 5768.639992
EXTENSION         11 5769.207484 5767.920196
REFLECTION        13 5768.639992 5767.808816
HI-REDUCTION      15 5767.920196 5767.808816
HI-REDUCTION      17 5767.870572 5767.684962
HI-REDUCTION      19 5767.808816 5767.684962
HI-REDUCTION      21 5767.699563 5767.679018
HI-REDUCTION      23 5767.684962 5767.668976
HI-REDUCTION      25 5767.679018 5767.661651
HI-REDUCTION      27 5767.668976 5767.661651
LO-REDUCTION      29 5767.663073 5767.659384
HI-REDUCTION      31 5767.661651 5767.659384
HI-REDUCTION      33 5767.659726 5767.659384
HI-REDUCTION      35 5767.659417 5767.659210
HI-REDUCTION      37 5767.659384 5767.659085
HI-REDUCTION      39 5767.659210 5767.659085
Exiting from Nelder Mead minimizer
    41 function evaluations used
[1] "Number of positions in original file ::"
[2] "6370"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "6370"                                       
final  value 6127.228984 
converged
final  value 5767.659061 
converged
final  value 5763.247991 
converged
final  value 5809.962884 
converged
final  value 5758.887693 
converged
final  value 5383.740548 
converged
[1] "Number of positions in original file ::"
[2] "6370"                                   
[1] "Number of positions after MAF filtering  ::"
[2] "6370"                                       
final  value 6127.390018 
converged
final  value 5768.378353 
converged
final  value 5763.348008 
converged
final  value 5811.388100 
converged
final  value 5760.214699 
converged
final  value 5383.756892 
converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 61 ]
> 
> 
> proc.time()
   user  system elapsed 
   7.18    0.67    7.84