* installing *source* package ‘RTMB’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (6)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RTMB.cpp -o RTMB.o In file included from RTMB.cpp:1: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RTMB.cpp:1: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RTMB.cpp:1: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from RTMB.cpp:1: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:5: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:5: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:5: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from RcppExports.cpp:5: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c TMB.cpp -o TMB.o In file included from TMB.cpp:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from TMB.cpp:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from TMB.cpp:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from TMB.cpp:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ In file included from TMB.cpp:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:123: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMBad/TMBad.cpp:4324:10: warning: variable 'total' set but not used [-Wunused-but-set-variable] size_t total = 0; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distributions.cpp -o distributions.o In file included from distributions.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from distributions.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from distributions.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from distributions.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c math.cpp -o math.o In file included from math.cpp:4: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from math.cpp:4: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from math.cpp:4: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from math.cpp:4: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ In file included from math.cpp:4: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:207: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/tmbutils/sparse_matrix_exponential.hpp:185:10: warning: class 'PackWrap' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] friend class TMBad::PackWrap; ^ math.cpp:348:46: note: in instantiation of template class 'sparse_matrix_exponential::expm_series' requested here sparse_matrix_exponential::expm_series F(AT_, N_, cfg_); ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c math_complex.cpp -o math_complex.o In file included from math_complex.cpp:13: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from math_complex.cpp:13: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from math_complex.cpp:13: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from math_complex.cpp:13: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_SAFEBOUNDS -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c misc.cpp -o misc.o In file included from misc.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from misc.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from misc.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from misc.cpp:2: In file included from ./RTMB.h:2: In file included from ./TMB.h:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RTMB.so RTMB.o RcppExports.o TMB.o distributions.o math.o math_complex.o misc.o -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN/RTMB.Rcheck/00LOCK-RTMB/00new/RTMB/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘fft’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘df’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dt’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dnbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘besselK’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselI’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselJ’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselY’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘matrix’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘apply’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘sapply’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘outer’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dmultinom’ from package ‘stats’ in package ‘RTMB’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTMB)