context("Linear Discriminant Classifier") # Simple dataset used in the tests data(testdata) modelform <- testdata$modelform classname<-all.vars(modelform)[1] D <- testdata$D D_test <- testdata$D_test X <- testdata$X X_u <- testdata$X_u y <- testdata$y X_test <- testdata$X_test y_test <- testdata$y_test test_that("Different input schemes", { g_matrix <- LinearDiscriminantClassifier(X,y) g_model <- LinearDiscriminantClassifier(modelform, D) expect_equal(predict(g_matrix, X_test),predict(g_model, D_test)) expect_equal(loss(g_matrix, X_test, y_test),loss(g_model, D_test)) }) test_that("Scaling input has some expected properties", { g_unscaled <- LinearDiscriminantClassifier(X, y, x_center=TRUE, scale=FALSE) g_unscaled2 <- LinearDiscriminantClassifier(X, y, x_center=FALSE, scale=FALSE) g_scaled <- LinearDiscriminantClassifier(X, y, x_center=TRUE, scale=TRUE) expect_equal(predict(g_scaled, X_test),predict(g_unscaled, X_test)) expect_equal(predict(g_unscaled2, X_test),predict(g_unscaled, X_test)) expect_equal(predict(g_scaled, X_test)=="-1", posterior(g_scaled, X_test)[,1]>=0.5) expect_equal(predict(g_unscaled, X_test)=="-1", posterior(g_unscaled, X_test)[,1]>=0.5) expect_equal(loss(g_scaled, X_test, y_test)-loss(g_unscaled, X_test, y_test),rep(-0.9848311,nrow(X_test)),tolerance=10e-7) expect_equal(loss(g_unscaled, X_test, y_test),loss(g_unscaled2, X_test, y_test)) expect_equal(posterior(g_scaled, X_test)[,1],posterior(g_unscaled, X_test)[,1], tolerance=10e-5) expect_equal(posterior(g_unscaled2, X_test),posterior(g_unscaled, X_test)) expect_equal(line_coefficients(g_scaled), line_coefficients(g_unscaled)) expect_equal(line_coefficients(g_unscaled), line_coefficients(g_unscaled2)) })