* using log directory ‘/srv/hornik/tmp/CRAN_pretest/RSItools.Rcheck’
* using R Under development (unstable) (2025-10-10 r88914)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘RSItools/DESCRIPTION’ ... OK
* this is package ‘RSItools’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Prakash Kumar <prakash289111@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  GGE (9:63)

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘TType’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Prakash",
                      family = "Kumar",
                      role = c("aut", "cre"),
                      email = "prakash289111@gmail.com"),
               person(given = c("Himadri", "Sekhar"),
                      family = "Roy",
                      role = "aut"),
               person(given = c("Ranjit", "Kumar"),
                      family = "Paul",
                      role = "aut"),
               person(given = "md.",
                      family = "Yeasin",
                      role = "aut"),
               person(given = c("Amrit", "Kumar"),
                      family = "Paul",
                      role = "aut"))
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RSItools’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] NOTE
compute_rsi: no visible binding for global variable ‘GE’
compute_rsi: no visible binding for global variable ‘gmean’
compute_rsi: no visible binding for global variable ‘emean’
compute_rsi: no visible binding for global variable ‘vij’
compute_rsi: no visible binding for global variable ‘abs_vij’
compute_rsi: no visible binding for global variable ‘rij’
compute_rsi: no visible global function definition for ‘var’
compute_rsi: no visible binding for global variable ‘RS’
compute_rsi: no visible binding for global variable ‘S2’
compute_rsi: no visible binding for global variable ‘rRS’
compute_rsi: no visible binding for global variable ‘rS2’
compute_rsi: no visible binding for global variable ‘RSI_value’
compute_rsi: no visible binding for global variable ‘rRSI’
rsi_biplot: no visible binding for global variable ‘GE’
rsi_biplot: no visible global function definition for ‘prcomp’
rsi_biplot: no visible binding for global variable ‘PC1’
rsi_biplot: no visible binding for global variable ‘PC2’
rsi_biplot: no visible binding for global variable ‘Env’
rsi_biplot: no visible binding for global variable ‘stab_cat’
rsi_biplot: no visible binding for global variable ‘size_var’
rsi_biplot: no visible binding for global variable ‘Genotype’
Undefined global functions or variables:
  Env GE Genotype PC1 PC2 RS RSI_value S2 abs_vij emean gmean prcomp
  rRS rRSI rS2 rij size_var stab_cat var vij
Consider adding
  importFrom("stats", "prcomp", "var")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs