installing dependencies ‘Bchron’, ‘biomod2’, ‘ecospat’,
  ‘leastcostpath’, ‘rnaturalearthhires’, ‘Rphylopars’, ‘RRphylo’

Warning: package ‘rnaturalearthhires’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages
begin installing package ‘Rphylopars’
begin installing package ‘RRphylo’
begin installing package ‘leastcostpath’
begin installing package ‘biomod2’
begin installing package ‘Bchron’
* installing *source* package ‘leastcostpath’ ...
** this is package ‘leastcostpath’ version ‘2.0.13’
** package ‘leastcostpath’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (leastcostpath)
* installing *source* package ‘Bchron’ ...
** this is package ‘Bchron’ version ‘4.7.8’
** package ‘Bchron’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWZMVhc/R.INSTALL2e601816799a8f/Bchron/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Bchron.c -o Bchron.o
In file included from Bchron.c:4:
Bchron.c: In function ‘dtweedielogwsmallp’:
/home/hornik/tmp/R-d-gcc-15/include/Rmath.h:252:25: warning: ‘*A[0]’ may be used uninitialized [-Wmaybe-uninitialized]
  252 | #define fmax2           Rf_fmax2
Bchron.c:100:12: note: in expansion of macro ‘fmax2’
  100 |   double m=fmax2(A[0],hij-lowj+1);
      |            ^~~~~
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Bchron.so Bchron.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWZMVhc/R.INSTALL2e601816799a8f/Bchron/src'
installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-Bchron/00new/Bchron/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Bchron)
* installing *source* package ‘RRphylo’ ...
** this is package ‘RRphylo’ version ‘3.0.1’
** package ‘RRphylo’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RRphylo)
* installing *source* package ‘biomod2’ ...
** this is package ‘biomod2’ version ‘4.3-4-3’
** package ‘biomod2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘cito’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mda’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘gam’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘earth’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘maxnet’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘randomForest’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘xgboost’
** testing if installed package can be loaded from final location
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘cito’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mda’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘gam’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘earth’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘maxnet’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘randomForest’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘xgboost’
** testing if installed package keeps a record of temporary installation path
* DONE (biomod2)
begin installing package ‘ecospat’
* installing *source* package ‘Rphylopars’ ...
** this is package ‘Rphylopars’ version ‘0.3.10’
** package ‘Rphylopars’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVhbG3G/R.INSTALL2e601056484d3d/Rphylopars/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c phylopars_rcpp.cpp -o phylopars_rcpp.o
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Rphylopars.so RcppExports.o phylopars_rcpp.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVhbG3G/R.INSTALL2e601056484d3d/Rphylopars/src'
installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-Rphylopars/00new/Rphylopars/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rphylopars)
* installing *source* package ‘ecospat’ ...
** this is package ‘ecospat’ version ‘4.1.2’
** package ‘ecospat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ecospat)

checking RRgeo_0.0.6.tar.gz ...

Depends:
Package: RRgeo
  Depends: R (>= 3.6.0)
  Imports: ape, methods,pbapply,Rphylopars,RRphylo,dismo (>=
    1.3),gtools, terra, adehabitatMA, ecospat (>= 3.2.1), foreach,
    doParallel, PresenceAbsence, parallel, ade4, sp, sf,scales, ks,
    leastcostpath, doSNOW, biomod2 (>= 4.2),utils

Timings:
         user system elapsed
RRgeo 431.674 20.526 491.661

Results:
Check status summary:
                  ERROR
  Source packages     1

Check results summary:
RRgeo ... ERROR
* checking examples ... [178s/213s] ERROR