* using log directory ‘/srv/hornik/tmp/CRAN/RPointCloud.Rcheck’
* using R Under development (unstable) (2024-06-20 r86796)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘RPointCloud/DESCRIPTION’ ... OK
* this is package ‘RPointCloud’ version ‘0.6.0’
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Kevin R. Coombes <krc@silicovore.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  Elihuya (16:18)
  RPointCloud (16:45)
  TDA (12:18, 12:36, 15:13)
  al (19:43)
  et (19:40)
  preprint (19:20)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RPointCloud’ can be installed ... [10s/10s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  m00-immune.Rd: Mercator, ripsDiag, TDA
  m01-CLL.Rd: daisy, ripsDiag, TDA
  m02-cytof.Rd: ripsDiag, TDA
  m03-disentangle.Rd: ripsDiag
  m04-Cycle-class.Rd: TDA, ripsDiag
  m05-Feature-class.Rd: colorRamp2, circlize
  m08-LoopCircos-Class.Rd: ripsDiag
  m09-voids.R.Rd: rgl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/15s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
m09-voids.R 18.327  1.148   8.364
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [14s/14s] OK
  Running ‘test-LF.R’ [2s/2s]
  Comparing ‘test-LF.Rout’ to ‘test-LF.Rout.save’ ... OK
  Running ‘test-indcyc.R’ [3s/3s]
  Comparing ‘test-indcyc.Rout’ to ‘test-indcyc.Rout.save’ ... OK
  Running ‘test-index.R’ [4s/4s]
  Comparing ‘test-index.Rout’ to ‘test-index.Rout.save’ ... OK
  Running ‘test-signif.R’ [4s/4s]
  Comparing ‘test-signif.Rout’ to ‘test-signif.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [58s/46s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs