downloading reverse dependencies ... downloading epwshiftr_0.1.4.tar.gz ... ok downloading eurocordexr_0.2.5.tar.gz ... ok downloading ncdfCF_0.4.0.tar.gz ... ok downloading ncdfgeom_1.1.6.tar.gz ... ok downloading ncmeta_0.4.0.tar.gz ... ok downloading oceanexplorer_0.1.0.tar.gz ... ok downloading ProfoundData_0.2.1.tar.gz ... ok downloading QBMS_1.5.0.tar.gz ... ok downloading RGCxGC_1.2.0.tar.gz ... ok downloading tidync_0.4.0.tar.gz ... ok downloading HelpersMG_6.4.5.tar.gz ... ok downloading IDSL.MXP_2.0.tar.gz ... ok downloading MALDIquantForeign_0.14.1.tar.gz ... ok downloading REddyProcNCDF_1.1.4.tar.gz ... ok downloading stars_0.6-8.tar.gz ... ok installing dependencies ‘areal’, ‘BayesianTools’, ‘cubble’, ‘cubelyr’, ‘eplusr’, ‘MALDIquant’, ‘ncdf4.helpers’, ‘ncdfgeom’, ‘OpenStreetMap’, ‘psychrolib’, ‘ptw’, ‘readBrukerFlexData’, ‘readMzXmlData’, ‘REddyProc’, ‘RNetCDF’, ‘starsdata’, ‘thematic’ Warning: package ‘starsdata’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘solartime’, ‘bigleaf’, ‘mlegp’ begin installing package ‘solartime’ begin installing package ‘mlegp’ begin installing package ‘eplusr’ begin installing package ‘psychrolib’ begin installing package ‘ncdf4.helpers’ begin installing package ‘areal’ begin installing package ‘thematic’ begin installing package ‘BayesianTools’ begin installing package ‘ptw’ begin installing package ‘cubelyr’ begin installing package ‘MALDIquant’ begin installing package ‘readMzXmlData’ begin installing package ‘OpenStreetMap’ begin installing package ‘readBrukerFlexData’ begin installing package ‘cubble’ begin installing package ‘RNetCDF’ * installing *source* package ‘readBrukerFlexData’ ... ** this is package ‘readBrukerFlexData’ version ‘1.9.3’ ** package ‘readBrukerFlexData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readBrukerFlexData) * installing *source* package ‘ncdf4.helpers’ ... ** this is package ‘ncdf4.helpers’ version ‘0.3-7’ ** package ‘ncdf4.helpers’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdf4.helpers) * installing *source* package ‘solartime’ ... ** this is package ‘solartime’ version ‘0.0.4’ ** package ‘solartime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (solartime) begin installing package ‘bigleaf’ * installing *source* package ‘readMzXmlData’ ... ** this is package ‘readMzXmlData’ version ‘2.8.3’ ** package ‘readMzXmlData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readMzXmlData) * installing *source* package ‘cubelyr’ ... ** this is package ‘cubelyr’ version ‘1.0.2’ ** package ‘cubelyr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cubelyr) * installing *source* package ‘thematic’ ... ** this is package ‘thematic’ version ‘0.1.6’ ** package ‘thematic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thematic) * installing *source* package ‘ptw’ ... ** this is package ‘ptw’ version ‘1.9-16’ ** package ‘ptw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1qAdMh/R.INSTALL5c5822acf7b79/ptw/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c approx.c -o approx.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smth.c -o smth.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wcc.c -o wcc.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wccStick.c -o wccStick.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ptw.so approx.o register.o smth.o wcc.o wccStick.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1qAdMh/R.INSTALL5c5822acf7b79/ptw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ptw/00new/ptw/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ptw) * installing *source* package ‘mlegp’ ... ** this is package ‘mlegp’ version ‘3.1.9’ ** package ‘mlegp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpI6AN1B/R.INSTALL5c5846cadb668/mlegp/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFMT.c -o SFMT.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lbfgs.c -o lbfgs.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp.c -o mlegp.o In file included from mlegp.c:9: matrix_vector.h:360:13: warning: ‘printVector’ defined but not used [-Wunused-function] 360 | static void printVector(const char *fmt, const double *b, int m) | ^~~~~~~~~~~ matrix_vector.h:346:13: warning: ‘printPackedMatrix’ defined but not used [-Wunused-function] 346 | static void printPackedMatrix(const char *fmt, const double *a, int n) | ^~~~~~~~~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp_init.c -o mlegp_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nelder_mead_min.c -o nelder_mead_min.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mlegp.so SFMT.o lbfgs.o mlegp.o mlegp_init.o nelder_mead_min.o print.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpI6AN1B/R.INSTALL5c5846cadb668/mlegp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mlegp/00new/mlegp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlegp) * installing *source* package ‘areal’ ... ** this is package ‘areal’ version ‘0.1.8’ ** package ‘areal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (areal) * installing *source* package ‘MALDIquant’ ... ** this is package ‘MALDIquant’ version ‘1.22.3’ ** package ‘MALDIquant’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJbWAvb/R.INSTALL5c58f1f742f29/MALDIquant/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colMedians.c -o colMedians.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c localMaxima.c -o localMaxima.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lowerConvexHull.c -o lowerConvexHull.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c morphologicalFilters.c -o morphologicalFilters.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snip.c -o snip.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJbWAvb/R.INSTALL5c58f1f742f29/MALDIquant/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MALDIquant/00new/MALDIquant/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘approxfun’ from package ‘stats’ in package ‘MALDIquant’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIquant) * installing *source* package ‘bigleaf’ ... ** this is package ‘bigleaf’ version ‘0.8.2’ ** package ‘bigleaf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigleaf) begin installing package ‘REddyProc’ * installing *source* package ‘cubble’ ... ** this is package ‘cubble’ version ‘1.0.0’ ** package ‘cubble’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cubble) * installing *source* package ‘psychrolib’ ... ** this is package ‘psychrolib’ version ‘2.5.2’ ** package ‘psychrolib’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVZDLJt/R.INSTALL5c5745945c33b/psychrolib/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bisection.cpp -o bisection.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o psychrolib.so RcppExports.o bisection.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVZDLJt/R.INSTALL5c5745945c33b/psychrolib/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-psychrolib/00new/psychrolib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (psychrolib) * installing *source* package ‘RNetCDF’ ... ** this is package ‘RNetCDF’ version ‘2.10-2’ ** using staged installation configure: Find compiler/linker variables from environment: checking CFLAGS... -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native checking CPPFLAGS... -I/usr/local/include checking LDFLAGS... -Wl,-O1 checking LIBS... configure: Select C compiler: checking C compiler from --with-cc... checking C compiler from R... gcc-14 -std=gnu23 configure: Find compiler/linker variables from R: checking R_CFLAGS... -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native checking R_CPPFLAGS... -I/usr/local/include checking R_LDFLAGS... -Wl,-O1 checking for gcc... gcc-14 -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 -std=gnu23 accepts -g... yes checking for gcc-14 -std=gnu23 option to enable C11 features... none needed checking for gcc-14 -std=gnu23 options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking whether _WIN32 is declared... no checking whether __APPLE__ is declared... no configure: Operating system is Unix-alike checking for nc-config... yes configure: Check compiler/linker variables from nc-config: checking nc-config --cc... /usr/bin/cc configure: Specify --with-cc if a different compiler is needed checking nc-config --cflags... -I/usr/include -I/usr/include/hdf5/serial checking nc-config --libs... -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf checking build with nc-config... yes configure: Proceeding with settings from nc-config configure: Skipping pkg-config configure: Check compiler type sizes and language features checking size of int... 4 checking size of long long... 8 checking size of size_t... 8 checking for C/C++ restrict keyword... __restrict__ configure: Check NetCDF features: checking for netcdf.h... yes checking for library containing nc_open... none required checking for nc_rename_grp... yes checking for nc_get_var_chunk_cache... yes checking for nc_inq_var_szip... yes checking for nc_inq_var_endian... yes checking for nc_def_var_filter... yes checking for nc_inq_var_filter_ids... yes checking for nc_inq_var_filter_info... yes checking for nc_reclaim_data... yes checking for netcdf_filter.h... yes checking whether NC_64BIT_DATA is declared... yes checking whether NC_FORMAT_64BIT_DATA is declared... yes checking whether NC_DISKLESS is declared... yes checking whether NC_PERSIST is declared... yes configure: Check for parallel NetCDF features: checking for mpi.h... no checking for MPI_Init... no configure: WARNING: MPI not available. Specify --with-cc if needed. configure: WARNING: NetCDF parallel I/O requires MPI configure: Check for udunits2 features: checking for library containing XML_ErrorString... -lexpat checking for library containing ut_read_xml... -ludunits2 checking for ut_offset_by_time... yes checking for ut_decode_time... yes checking for ut_encode_time... yes checking for udunits2.h... yes configure: Final compiler and linker variables for make: CC=/usr/bin/cc PKG_CFLAGS=-I/usr/include -I/usr/include/hdf5/serial PKG_CPPFLAGS= PKG_LDFLAGS= LIBS=-ludunits2 -lexpat -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf configure: creating ./config.status config.status: creating src/Makefile.common config.status: creating R/config.R ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptTaWCz/R.INSTALL5c59b703936ba/RNetCDF/src' WINDOWS="FALSE" \ MAKE="make" \ R_HOME="/home/hornik/tmp/R-d-gcc-14" \ R_ARCH="" \ /bin/bash ../tools/make-recursive.sh make -f /home/hornik/tmp/R-d-gcc-14/etc//Makeconf -f /home/hornik/tmp/R-d-gcc-14/share/make/shlib.mk -f /home/hornik/.R/Makevars-gcc -f Makefile.common OBJECTS= attribute.o common.o convert.o dataset.o dimension.o group.o init.o type.o udunits.o variable.o SHLIB=RNetCDF$(SHLIB_EXT) RNetCDF_all make[2]: Entering directory '/home/hornik/tmp/scratch/RtmptTaWCz/R.INSTALL5c59b703936ba/RNetCDF/src' /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c attribute.c -o attribute.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from attribute.c:41: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from common.c:35: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c convert.c -o convert.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from convert.c:47: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dataset.c -o dataset.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from dataset.c:41: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dimension.c -o dimension.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from dimension.c:41: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c group.c -o group.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from group.c:41: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o In file included from /home/hornik/tmp/R-d-gcc-14/include/Rinternals.h:44, from init.c:33: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c type.c -o type.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from type.c:41: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c udunits.c -o udunits.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from udunits.c:47: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.10-2\" -DPACKAGE_STRING=\"RNetCDF\ 2.10-2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=8 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c variable.c -o variable.o In file included from /home/hornik/tmp/R-d-gcc-14/include/R.h:70, from variable.c:41: /home/hornik/tmp/R-d-gcc-14/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic] 65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA | ^ /usr/bin/cc -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o RNetCDF.so attribute.o common.o convert.o dataset.o dimension.o group.o init.o type.o udunits.o variable.o -ludunits2 -lexpat -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmptTaWCz/R.INSTALL5c59b703936ba/RNetCDF/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptTaWCz/R.INSTALL5c59b703936ba/RNetCDF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RNetCDF/00new/RNetCDF/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNetCDF) begin installing package ‘ncdfgeom’ * installing *source* package ‘BayesianTools’ ... ** this is package ‘BayesianTools’ version ‘0.1.8’ ** package ‘BayesianTools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpN2XeBW/R.INSTALL5c58927154b7e/BayesianTools/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vsem.cpp -o vsem.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o BayesianTools.so RcppExports.o init.o vsem.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpN2XeBW/R.INSTALL5c58927154b7e/BayesianTools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BayesianTools/00new/BayesianTools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesianTools) * installing *source* package ‘ncdfgeom’ ... ** this is package ‘ncdfgeom’ version ‘1.1.6’ ** package ‘ncdfgeom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdfgeom) * installing *source* package ‘OpenStreetMap’ ... ** this is package ‘OpenStreetMap’ version ‘0.4.0’ ** package ‘OpenStreetMap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘raster’ with signature ‘"osmtile"’: no definition for class “osmtile” in method for ‘raster’ with signature ‘"OpenStreetMap"’: no definition for class “OpenStreetMap” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStreetMap) * installing *source* package ‘REddyProc’ ... ** this is package ‘REddyProc’ version ‘1.3.3’ ** package ‘REddyProc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp494DHm/R.INSTALL5ccf7412da016/REddyProc/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RHLightResponseCostC.cpp -o RHLightResponseCostC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c whichValueGreaterEqualC.cpp -o whichValueGreaterEqualC.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o REddyProc.so RHLightResponseCostC.o RcppExports.o whichValueGreaterEqualC.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp494DHm/R.INSTALL5ccf7412da016/REddyProc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-REddyProc/00new/REddyProc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (REddyProc) * installing *source* package ‘eplusr’ ... ** this is package ‘eplusr’ version ‘0.16.2’ ** package ‘eplusr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eplusr) checking RNetCDF_2.10-2.tar.gz ... checking epwshiftr_0.1.4.tar.gz ... checking eurocordexr_0.2.5.tar.gz ... checking ncdfCF_0.4.0.tar.gz ... checking ncdfgeom_1.1.6.tar.gz ... checking ncmeta_0.4.0.tar.gz ... checking oceanexplorer_0.1.0.tar.gz ... checking ProfoundData_0.2.1.tar.gz ... checking QBMS_1.5.0.tar.gz ... checking RGCxGC_1.2.0.tar.gz ... checking tidync_0.4.0.tar.gz ... checking HelpersMG_6.4.5.tar.gz ... checking IDSL.MXP_2.0.tar.gz ... checking MALDIquantForeign_0.14.1.tar.gz ... checking REddyProcNCDF_1.1.4.tar.gz ... checking stars_0.6-8.tar.gz ... Depends: Package: RNetCDF Depends: R (>= 3.0.0) Timings: user system elapsed RNetCDF 36.649 4.931 43.993 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 3 12 Check results summary: RNetCDF ... OK rdepends_epwshiftr ... NOTE * checking Rd cross-references ... NOTE rdepends_eurocordexr ... OK rdepends_HelpersMG ... OK rdepends_IDSL.MXP ... OK rdepends_MALDIquantForeign ... OK rdepends_ncdfCF ... OK rdepends_ncdfgeom ... OK rdepends_ncmeta ... OK rdepends_oceanexplorer ... OK rdepends_ProfoundData ... NOTE * checking Rd cross-references ... NOTE rdepends_QBMS ... OK rdepends_REddyProcNCDF ... OK rdepends_RGCxGC ... OK rdepends_stars ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_tidync ... OK