* using log directory 'd:/RCompile/CRANincoming/R-devel/REMixed.Rcheck'
* using R Under development (unstable) (2025-06-22 r88341 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'REMixed/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'REMixed' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Auriane Gabaut <auriane.gabaut@inria.fr>'

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'REMixed' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'remix.Rd':
remix
  Code: function(project = NULL, final.project = NULL, dynFUN, y,
                 ObsModel.transfo, alpha, lambda, eps1 = 10^(-2), eps2
                 = 10^(-1), selfInit = FALSE, pop.set1 = NULL, pop.set2
                 = NULL, pop.set3 = NULL, prune = NULL, n = NULL,
                 parallel = TRUE, ncores = NULL, print = TRUE, verbose
                 = FALSE, digits = 3, trueValue = NULL, finalSAEM =
                 FALSE, test = TRUE, max.iter = +Inf, p.max = 0.05)
  Docs: function(project = NULL, final.project = NULL, dynFUN, y,
                 ObsModel.transfo, alpha, lambda, eps1 = 10^(-2), eps2
                 = 10^(-2), selfInit = FALSE, pop.set1 = NULL, pop.set2
                 = NULL, pop.set3 = NULL, prune = NULL, n = NULL,
                 parallel = TRUE, ncores = NULL, print = TRUE, verbose
                 = FALSE, digits = 3, trueValue = NULL, finalSAEM =
                 FALSE, test = TRUE, max.iter = +Inf, p.max = 0.05)
  Mismatches in argument default values:
    Name: 'eps2' Code: 10^(-1) Docs: 10^(-2)

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE