library(testthat) update_expectation <- FALSE credential_admin <- retrieve_credential_testing("dag-write", username = "admin") credential_user <- retrieve_credential_testing("dag-write", username = "user-dag1") url <- credential_admin$redcap_uri testthat::expect_equal(url, credential_user$redcap_uri) test_that("Smoke Test", { testthat::skip_on_cran() skip_if_onlyread() start_clean_result <- REDCapR:::clean_start_dag_write( batch = FALSE, verbose = FALSE ) project <- start_clean_result$redcap_project expect_type(start_clean_result, "list") }) test_that("default", { testthat::skip_on_cran() skip_if_onlyread() path_expected_before <- "test-data/specific-redcapr/write-dag/before.R" path_expected_after <- "test-data/specific-redcapr/write-dag/after.R" start_clean_result <- REDCapR:::clean_start_dag_write( batch = FALSE, verbose = FALSE ) project <- start_clean_result$redcap_project expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- redcap_read_oneshot( redcap_uri = url, token = credential_user$token, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected_before) expected_data_frame <- retrieve_expected(path_expected_before) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) #returned_object$data$bmi<-NULL; returned_object$data$age<-NULL;dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) ds_updated <- returned_object$data ds_updated$last_name <- paste("last name", seq_len(nrow(ds_updated))) ds_updated$demographics_complete <- REDCapR::constant("form_complete") # ds_updated$record_id <- sub("^\\d+-(\\d+)$", "\\1", ds_updated$record_id) # ds_updated$redcap_data_access_group <- NULL redcap_write_oneshot( ds = ds_updated, redcap_uri = url, token = credential_user$token, verbose = FALSE ) returned_object <- redcap_read_oneshot( redcap_uri = url, token = credential_admin$token, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected_after) expected_data_frame <- retrieve_expected(path_expected_after) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) #returned_object$data$bmi<-NULL; returned_object$data$age<-NULL;dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) }) test_that("default w/ batching", { testthat::skip_on_cran() skip_if_onlyread() path_expected_before <- "test-data/specific-redcapr/write-dag/before.R" path_expected_after <- "test-data/specific-redcapr/write-dag/after.R" start_clean_result <- REDCapR:::clean_start_dag_write(batch = TRUE) project <- start_clean_result$redcap_project expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- redcap_read_oneshot( redcap_uri = url, token = credential_user$token, verbose = FALSE ) # Use the same as the non-batched test expected_data_frame <- retrieve_expected(path_expected_before) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) #returned_object$data$bmi<-NULL; returned_object$data$age<-NULL;dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) ds_updated <- returned_object$data ds_updated$last_name <- paste("last name", seq_len(nrow(ds_updated))) ds_updated$demographics_complete <- REDCapR::constant("form_complete") # ds_updated$record_id <- sub("^\\d+-(\\d+)$", "\\1", ds_updated$record_id) # ds_updated$redcap_data_access_group <- NULL redcap_write_oneshot( ds = ds_updated, redcap_uri = url, token = credential_user$token, verbose = FALSE ) returned_object <- redcap_read_oneshot( redcap_uri = url, token = credential_admin$token, verbose = FALSE ) # Use the same as the non-batched test expected_data_frame <- retrieve_expected(path_expected_after) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) #returned_object$data$bmi<-NULL; returned_object$data$age<-NULL;dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) }) test_that("reassign subject to a different dag", { testthat::skip_on_cran() skip_if_onlyread() # Step 1: Initialize the project start_clean_result <- REDCapR:::clean_start_dag_write( batch = FALSE, verbose = FALSE ) # url <- start_clean_result$redcap_project$redcap_uri # token_for_admin <- start_clean_result$redcap_project$token # token_for_dag_user <- "C79DB3836373478986928303B52E74DF" # Step 2a: Retrieve the dataset as admin. The 3 subjects' DAGs are 'daga', 'daga', & 'dagb' ds_admin_1 <- redcap_read_oneshot( redcap_uri = url, token = credential_admin$token, export_data_access_groups = TRUE, verbose = FALSE )$data expect_equal(nrow(ds_admin_1), 3L) expect_equal(ds_admin_1$record_id , c("331-1", "331-2", "332-3")) expect_equal(ds_admin_1$redcap_data_access_group, c("daga", "daga", "dagb" )) # Step 2b: Retrieve the dataset as user. Only the first two subjects are visible to DAG-A users initially. ds_user_1 <- redcap_read_oneshot( redcap_uri = url, token = credential_user$token, verbose = FALSE )$data expect_equal(nrow(ds_user_1), 2L) expect_equal(ds_user_1$record_id, c("331-1", "331-2")) #Step 3: Reassign the 2nd subject and upload to server ds_admin_1$redcap_data_access_group[2] <- "dagb" redcap_write_oneshot( ds = ds_admin_1, redcap_uri = url, token = credential_admin$token, verbose = FALSE ) # Step 4a: Retrieve the dataset as admin. Should the 2nd row automatically change from '331-2' to '332-2'? ds_admin_2 <- redcap_read_oneshot( redcap_uri = url, token = credential_admin$token, export_data_access_groups = TRUE, verbose = FALSE )$data expect_equal(nrow(ds_admin_2), 3L) expect_equal(ds_admin_2$record_id , c("331-1", "331-2", "332-3")) # expect_equal(ds_admin_2$record_id , c("331-1", "332-2", "332-3")) expect_equal(ds_admin_2$redcap_data_access_group, c("daga", "dagb", "dagb" )) # Step 4b: Retrieve the dataset as user. Now only one subject is visible to DAG-A users. ds_user_2 <- redcap_read_oneshot( redcap_uri = url, token = credential_user$token, verbose = FALSE )$data expect_equal(nrow(ds_user_2), 1L) expect_equal(ds_user_2$record_id, c("331-1")) }) rm(update_expectation, credential_admin, credential_user, url)