library(testthat) credential <- retrieve_credential_testing() update_expectation <- FALSE if (credential$redcap_uri != "https://redcap-dev-2.ouhsc.edu/redcap/api/") { testthat::skip("Skipping EAV test on non-dev server") } test_that("smoke test", { testthat::skip_on_cran() suppressMessages({ returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, verbose = TRUE ) }) expect_type(returned_object, "list") }) test_that("default", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/default.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame) # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("specify-forms", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/specify-forms.R" desired_forms <- c("demographics", "race_and_ethnicity") expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, forms = desired_forms, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame) # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("raw", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/raw.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, raw_or_label = "raw", verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct") # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("raw-and-dag", { testthat::skip("Temporarily turning off DAG on experimental function") testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/raw-and-dag.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, raw_or_label = "raw", export_data_access_groups = TRUE, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct") # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("label-and-dag", { testthat::skip("Temporarily turning off DAG on experimental function") testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/label-and-dag.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, raw_or_label = "label", export_data_access_groups = TRUE, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct") # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("label-header", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/label-header.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, raw_or_label_headers = "label", verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("filter-numeric", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/filter-numeric.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." filter <- "[age] >= 61" returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, filter_logic = filter, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct") # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_equal(returned_object$filter_logic, filter) expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("filter-character", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/filter-character.R" if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." filter <- "[name_first] = 'John Lee'" returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, filter_logic = filter, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct") # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_equal(returned_object$filter_logic, filter) expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("blank-for-gray-status-true", { testthat::skip_on_cran() credential_blank_for_gray <- retrieve_credential_testing("blank-for-gray-status") path_expected <- "test-data/specific-redcapr/read-oneshot-eav/blank-for-gray-true.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential_blank_for_gray$redcap_uri, token = credential_blank_for_gray$token, blank_for_gray_form_status = TRUE, verbose = FALSE ) d <- returned_object$data |> dplyr::select( -mugshot # Don't compare file IDs across servers. ) if (update_expectation) save_expected(d, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(d, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("blank-for-gray-status-false", { testthat::skip_on_cran() credential_blank_for_gray <- retrieve_credential_testing("blank-for-gray-status") path_expected <- "test-data/specific-redcapr/read-oneshot-eav/blank-for-gray-false.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential_blank_for_gray$redcap_uri, token = credential_blank_for_gray$token, blank_for_gray_form_status = FALSE, verbose = FALSE ) d <- returned_object$data |> dplyr::select( -mugshot # Don't compare file IDs across servers. ) if (update_expectation) save_expected(d, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(d, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_true(returned_object$filter_logic=="", "A filter was not specified.") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("date-range", { testthat::skip_on_cran() path_expected <- "test-data/specific-redcapr/read-oneshot-eav/default.R" expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\." start <- as.POSIXct(strptime("2018-08-01 03:00", "%Y-%m-%d %H:%M")) stop <- Sys.time() returned_object <- REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = credential$token, datetime_range_begin = start, datetime_range_end = stop, verbose = FALSE ) if (update_expectation) save_expected(returned_object$data, path_expected) expected_data_frame <- retrieve_expected(path_expected) expect_equal(returned_object$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object$data) expect_equal(returned_object$status_code, expected=200L) expect_equal(returned_object$raw_text, expected="", ignore_attr = TRUE) # dput(returned_object$raw_text) expect_true(returned_object$records_collapsed=="", "A subset of records was not requested.") expect_true(returned_object$fields_collapsed=="", "A subset of fields was not requested.") expect_equal(returned_object$filter_logic, "") expect_match(returned_object$outcome_message, regexp=expected_outcome_message, perl=TRUE) expect_true(returned_object$success) expect_s3_class(returned_object$data, "tbl") }) test_that("bad token -Error", { testthat::skip_on_cran() expected_outcome_message <- "The REDCapR record export operation was not successful\\." expect_error( regexp = expected_outcome_message, REDCapR:::redcap_read_oneshot_eav( redcap_uri = credential$redcap_uri, token = "BAD00000000000000000000000000000" ) ) }) rm(credential)