* using log directory ‘/srv/hornik/tmp/CRAN/RDS.Rcheck’ * using R Under development (unstable) (2024-01-29 r85841) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘RDS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RDS’ version ‘0.9-9’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] NOTE Maintainer: ‘Mark S. Handcock ’ Possibly misspelled words in DESCRIPTION: Beaudry (18:11) Ott (18:33) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘RDS’ can be installed ... [11s/11s] OK * used C compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s/19s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) MA.estimates.Rd:109: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:110-157: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:115: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:117: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MA.estimates.Rd:119: Lost braces 119 | \item{rds.data}{an \code{rds.data.frame} that indicates recruitment | ^ checkRd: (-1) MA.estimates.Rd:119-120: Lost braces 119 | \item{rds.data}{an \code{rds.data.frame} that indicates recruitment | ^ checkRd: (-1) MA.estimates.Rd:121: Lost braces 121 | \item{N}{an estimate of the number of members of the population being | ^ checkRd: (-1) MA.estimates.Rd:121-123: Lost braces 121 | \item{N}{an estimate of the number of members of the population being | ^ checkRd: (-1) MA.estimates.Rd:124: Lost braces 124 | \item{M1}{the number of networked populations generated at each iteration.} | ^ checkRd: (-1) MA.estimates.Rd:124: Lost braces 124 | \item{M1}{the number of networked populations generated at each iteration.} | ^ checkRd: (-1) MA.estimates.Rd:125: Lost braces 125 | \item{M2}{the number of (full) RDS populations generated for each | ^ checkRd: (-1) MA.estimates.Rd:125-126: Lost braces 125 | \item{M2}{the number of (full) RDS populations generated for each | ^ checkRd: (-1) MA.estimates.Rd:127: Lost braces 127 | \item{seed}{the random number seed used to initiate the computations.} | ^ checkRd: (-1) MA.estimates.Rd:127: Lost braces 127 | \item{seed}{the random number seed used to initiate the computations.} | ^ checkRd: (-1) MA.estimates.Rd:128: Lost braces 128 | \item{seed.selection}{an estimate of the mechanism guiding the choice | ^ checkRd: (-1) MA.estimates.Rd:128-141: Lost braces 128 | \item{seed.selection}{an estimate of the mechanism guiding the choice | ^ checkRd: (-1) MA.estimates.Rd:142: Lost braces 142 | \item{number.of.seeds}{The number of seeds chosen to initiate the | ^ checkRd: (-1) MA.estimates.Rd:142-143: Lost braces 142 | \item{number.of.seeds}{The number of seeds chosen to initiate the | ^ checkRd: (-1) MA.estimates.Rd:144: Lost braces 144 | \item{number.of.coupons}{The number of coupons given to each | ^ checkRd: (-1) MA.estimates.Rd:144-145: Lost braces 144 | \item{number.of.coupons}{The number of coupons given to each | ^ checkRd: (-1) MA.estimates.Rd:146: Lost braces 146 | \item{number.of.iterations}{The number of iterations used at the core | ^ checkRd: (-1) MA.estimates.Rd:146-147: Lost braces 146 | \item{number.of.iterations}{The number of iterations used at the core | ^ checkRd: (-1) MA.estimates.Rd:148: Lost braces 148 | \item{outcome.variable}{The name of the outcome variable} | ^ checkRd: (-1) MA.estimates.Rd:148: Lost braces 148 | \item{outcome.variable}{The name of the outcome variable} | ^ checkRd: (-1) MA.estimates.Rd:149: Lost braces 149 | \item{weight.type}{The type of weighting used (i.e. MA)} | ^ checkRd: (-1) MA.estimates.Rd:149: Lost braces 149 | \item{weight.type}{The type of weighting used (i.e. MA)} | ^ checkRd: (-1) MA.estimates.Rd:150: Lost braces 150 | \item{uncertainty}{The type of weighting used (i.e. MA)} | ^ checkRd: (-1) MA.estimates.Rd:150: Lost braces 150 | \item{uncertainty}{The type of weighting used (i.e. MA)} | ^ checkRd: (-1) MA.estimates.Rd:151: Lost braces 151 | \item{details}{A list of other diagnostic output from the computations.} | ^ checkRd: (-1) MA.estimates.Rd:151: Lost braces 151 | \item{details}{A list of other diagnostic output from the computations.} | ^ checkRd: (-1) MA.estimates.Rd:152: Lost braces 152 | \item{varestBS}{Output from the bootstrap procedure. A list with two | ^ checkRd: (-1) MA.estimates.Rd:152-154: Lost braces 152 | \item{varestBS}{Output from the bootstrap procedure. A list with two | ^ checkRd: (-1) MA.estimates.Rd:155: Lost braces 155 | \item{coefficient}{estimate of the parameter of the ERGM for the | ^ checkRd: (-1) MA.estimates.Rd:155-156: Lost braces 155 | \item{coefficient}{estimate of the parameter of the ERGM for the | ^ checkRd: (-1) MA.estimates.Rd:204: Lost braces in \itemize; meant \describe ? checkRd: (-1) MA.estimates.Rd:205: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [14s/14s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [6s/6s] OK Running ‘tests.R’ [6s/6s] * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs