* using log directory 'd:/RCompile/CRANincoming/R-devel/RCytoGPS.Rcheck'
* using R Under development (unstable) (2023-11-25 r85635 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'RCytoGPS/DESCRIPTION' ... OK
* this is package 'RCytoGPS' version '1.2.3'
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: 'Kevin R. Coombes <krc@silicovore.com>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCytoGPS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) 02-readLGF.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) 02-readLGF.Rd:27-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) 02-readLGF.Rd:40-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) 02-readLGF.Rd:44-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) 02-readLGF.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) 03-CytobandData.Rd:40-42: Lost braces
    40 |     \item{summary:}{\code{signature(object = "RCytoGPS")}}{
       |                                                           ^
checkRd: (-1) 06-Chromosome.Rd:44-47: Lost braces
    44 |     \item{image:}{\code{signature(object = "RCytoGPS")}}{
       |                                                         ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [24s] OK
  Running 'test01-chrom.R'
  Comparing 'test01-chrom.Rout' to 'test01-chrom.Rout.save' ... OK
  Running 'test02-gb.R'
  Comparing 'test02-gb.Rout' to 'test02-gb.Rout.save' ... OK
  Running 'test03-objects.R' [21s]
  Comparing 'test03-objects.Rout' to 'test03-objects.Rout.save' ... OK
  Running 'test100-read.R'
  Comparing 'test100-read.Rout' to 'test100-read.Rout.save' ...12c12
< Reading 1 file(s) from 'D:/RCompile/CRANincoming/R-devel/lib/RCytoGPS/Examples/JSONfiles'.
---
> Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
45c45
< Reading 2 file(s) from 'D:/RCompile/CRANincoming/R-devel/lib/RCytoGPS/Examples/JSONfiles'.
---
> Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
  Running 'test101-preclean.R'
  Comparing 'test101-preclean.Rout' to 'test101-preclean.Rout.save' ... OK
  Running 'testclip.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [49s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 NOTE