* using log directory ‘/srv/hornik/tmp/CRAN/R4HCR.Rcheck’ * using R Under development (unstable) (2024-08-20 r87029) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘R4HCR/DESCRIPTION’ ... OK * this is package ‘R4HCR’ version ‘0.0.0.9000’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/16s] NOTE Maintainer: ‘Jason L. Oke ’ New submission Version contains large components (0.0.0.9000) Found the following (possibly) invalid DOIs: DOI: 10.1016/S0140-6736(13)61752-3. From: man/Framingham.Rd Status: 404 Message: Not Found DOI: doi.org/10.1111/apt.15969 From: man/OXFIT.Rd Status: 404 Message: Not Found DOI: doi.org/10.1111/j.1740-9713.2011.00509.x From: man/Galton.Rd Status: 404 Message: Not Found DOI: doi.org/10.1136/bmjopen-2022-063014 From: man/Facemasks.Rd Status: 404 Message: Not Found DOI: doi.org/10.1182/blood.V78.3.838.838 From: man/BMT.Rd Status: 404 Message: Not Found DOI: doi.org/10.2139/ssrn.4448597 From: man/PTX.Rd man/PTXII.Rd Status: 404 Message: Not Found DOI: doi.org/10.7910/DVN/T0HSJ1 From: man/Galton.Rd Status: 404 Message: Not Found * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘R4HCR’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking Rd files ... [0s/0s] NOTE prepare_Rd: BCG.Rd:24-25: Dropping empty section \details prepare_Rd: CA19.Rd:24-26: Dropping empty section \source prepare_Rd: CBF.Rd:18-20: Dropping empty section \details prepare_Rd: Cotinine.Rd:19-21: Dropping empty section \details prepare_Rd: Doppler.Rd:24-26: Dropping empty section \references prepare_Rd: Duplex.Rd:22-23: Dropping empty section \details prepare_Rd: Duplex.Rd:27-29: Dropping empty section \references prepare_Rd: Facemasks.Rd:22-24: Dropping empty section \source prepare_Rd: Innova.Rd:22-24: Dropping empty section \source prepare_Rd: LVD.Rd:19-21: Dropping empty section \source prepare_Rd: LungCa.Rd:20-22: Dropping empty section \details prepare_Rd: Malformation.Rd:26-27: Dropping empty section \references prepare_Rd: MedSchools.Rd:23-25: Dropping empty section \source prepare_Rd: Milk.Rd:22-24: Dropping empty section \source prepare_Rd: NPguided.Rd:26-28: Dropping empty section \source prepare_Rd: Nodules.Rd:31-33: Dropping empty section \source prepare_Rd: PEFR.Rd:22-24: Dropping empty section \details prepare_Rd: PEFR.Rd:25-27: Dropping empty section \source prepare_Rd: Peptides.Rd:18-20: Dropping empty section \details prepare_Rd: Peptides.Rd:21-23: Dropping empty section \source prepare_Rd: Peptides.Rd:24-26: Dropping empty section \references prepare_Rd: PlasmaVolume.Rd:19-21: Dropping empty section \details prepare_Rd: SCAN.Rd:22-24: Dropping empty section \details prepare_Rd: Scotland.Rd:16-18: Dropping empty section \details prepare_Rd: Scotland.Rd:23-25: Dropping empty section \references prepare_Rd: Systolic.Rd:25-27: Dropping empty section \details prepare_Rd: Thrombosis.Rd:20-22: Dropping empty section \details prepare_Rd: USCancerStats.Rd:24-26: Dropping empty section \source prepare_Rd: Vaccinated.Rd:23-25: Dropping empty section \source prepare_Rd: Vaccinated.Rd:26-28: Dropping empty section \references * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [4s/4s] ERROR Running examples in ‘R4HCR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: LVD > ### Title: Left Ventricular Diastolic Diameter (LVD). > ### Aliases: LVD > ### Keywords: datasets > > ### ** Examples > > data(LVD, package = "R4HCR") > > > # population is 144 individuals arranged in 4 blocks > # sampling is done with two dice - > # scores indicate which row and column to select > # sample, three from each of the four blocks > # sample size n = 12 > > # simulate 12 throws of 2 dice > die1 <- sample(x = 1:6, 12, T) Error in sample.int(length(x), size, replace, prob) : T used instead of TRUE Calls: sample -> sample.int Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs