* using log directory 'd:/RCompile/CRANincoming/R-devel/R4HCR.Rcheck'
* using R Under development (unstable) (2024-08-20 r87029 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'R4HCR/DESCRIPTION' ... OK
* this is package 'R4HCR' version '0.0.0.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Jason L. Oke <jasonoke98@gmail.com>'

New submission

Version contains large components (0.0.0.9000)

Found the following (possibly) invalid DOIs:
  DOI: 10.1016/S0140-6736(13)61752-3.
    From: man/Framingham.Rd
    Status: 404
    Message: Not Found
  DOI: doi.org/10.1111/apt.15969
    From: man/OXFIT.Rd
    Status: 404
    Message: Not Found
  DOI: doi.org/10.1111/j.1740-9713.2011.00509.x
    From: man/Galton.Rd
    Status: 404
    Message: Not Found
  DOI: doi.org/10.1136/bmjopen-2022-063014
    From: man/Facemasks.Rd
    Status: 404
    Message: Not Found
  DOI: doi.org/10.1182/blood.V78.3.838.838
    From: man/BMT.Rd
    Status: 404
    Message: Not Found
  DOI: doi.org/10.2139/ssrn.4448597
    From: man/PTX.Rd
          man/PTXII.Rd
    Status: 404
    Message: Not Found
  DOI: doi.org/10.7910/DVN/T0HSJ1
    From: man/Galton.Rd
    Status: 404
    Message: Not Found

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'R4HCR' can be installed ... WARNING
Found the following significant warnings:
  Warning: D:/temp/RtmpSwxc7x/R.INSTALL3181c792847ec/R4HCR/man/PEFR.Rd:29: unknown macro '\doil'
See 'd:/RCompile/CRANincoming/R-devel/R4HCR.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking Rd files ... WARNING
prepare_Rd: BCG.Rd:24-25: Dropping empty section \details
prepare_Rd: CA19.Rd:24-26: Dropping empty section \source
prepare_Rd: CBF.Rd:18-20: Dropping empty section \details
prepare_Rd: Cotinine.Rd:19-21: Dropping empty section \details
prepare_Rd: Doppler.Rd:24-26: Dropping empty section \references
prepare_Rd: Duplex.Rd:22-23: Dropping empty section \details
prepare_Rd: Duplex.Rd:27-29: Dropping empty section \references
prepare_Rd: Facemasks.Rd:22-24: Dropping empty section \source
prepare_Rd: Innova.Rd:22-24: Dropping empty section \source
prepare_Rd: LVD.Rd:19-21: Dropping empty section \source
prepare_Rd: LungCa.Rd:20-22: Dropping empty section \details
prepare_Rd: Malformation.Rd:26-27: Dropping empty section \references
prepare_Rd: MedSchools.Rd:23-25: Dropping empty section \source
prepare_Rd: Milk.Rd:22-24: Dropping empty section \source
prepare_Rd: NPguided.Rd:26-28: Dropping empty section \source
prepare_Rd: Nodules.Rd:31-33: Dropping empty section \source
prepare_Rd: ./man/PEFR.Rd:29: unknown macro '\doil'
prepare_Rd: PEFR.Rd:22-24: Dropping empty section \details
prepare_Rd: PEFR.Rd:25-27: Dropping empty section \source
checkRd: (-1) PEFR.Rd:29: Lost braces
    29 | Bland JM, Altman DG. Measurement error. BMJ. 1996 Sep 21;313(7059):744. \doil{doi: 10.1136/bmj.313.7059.744}. PMID: 8819450; PMCID: PMC2352101
       |                                                                              ^
prepare_Rd: Peptides.Rd:18-20: Dropping empty section \details
prepare_Rd: Peptides.Rd:21-23: Dropping empty section \source
prepare_Rd: Peptides.Rd:24-26: Dropping empty section \references
prepare_Rd: PlasmaVolume.Rd:19-21: Dropping empty section \details
prepare_Rd: SCAN.Rd:22-24: Dropping empty section \details
prepare_Rd: Scotland.Rd:16-18: Dropping empty section \details
prepare_Rd: Scotland.Rd:23-25: Dropping empty section \references
prepare_Rd: Systolic.Rd:25-27: Dropping empty section \details
prepare_Rd: Thrombosis.Rd:20-22: Dropping empty section \details
prepare_Rd: USCancerStats.Rd:24-26: Dropping empty section \source
prepare_Rd: Vaccinated.Rd:23-25: Dropping empty section \source
prepare_Rd: Vaccinated.Rd:26-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in 'R4HCR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Innova
> ### Title: Rapid Antigen Detection for SARS-CoV-2 by Lateral Flow Assay.
> ### Aliases: Innova
> ### Keywords: datasets
> 
> ### ** Examples
> 
> require(meta)
Loading required package: meta
Loading required package: metadat
Loading 'meta' package (version 7.0-0).
Type 'help(meta)' for a brief overview.
Readers of 'Meta-Analysis with R (Use R!)' should install
older version of 'meta' package: https://tinyurl.com/dt4y5drs
> 
> data(Innova, package = "R4HCR")
> 
> # Meta-analysis of false-positive fraction
> ma1 <- metaprop(event = fp,
+ n = total,
+ studlab = phase,
+ backtransf=T,
+ data = Innova)
Error in chklogical(backtransf) : T used instead of TRUE
Calls: metaprop -> chklogical
Execution halted
* checking PDF version of manual ... [23s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 1 NOTE