* using log directory ‘/srv/hornik/tmp/CRAN/R4HCR.Rcheck’
* using R Under development (unstable) (2024-07-22 r86913)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1+b1)
    Debian flang-new version 18.1.8 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘R4HCR/DESCRIPTION’ ... OK
* this is package ‘R4HCR’ version ‘0.0.0.9000’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/7s] NOTE
Maintainer: ‘Jason L. Oke <jasonoke98@gmail.com>’

New submission

Version contains large components (0.0.0.9000)

Found the following (possibly) invalid URLs:
  URL: https://ssrn.com/abstract=4448597 (moved to https://www.ssrn.com/abstract=4448597)
    From: man/PTX.Rd
          man/PTXII.Rd
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

Found the following (possibly) invalid file URIs:
  URI: doi.org/10.1182/blood.V78.3.838.838
    From: man/BMT.Rd
  URI: doi.org/10.7910/DVN/T0HSJ1
    From: man/Galton.Rd
  URI: doi.org/10.1111/j.1740-9713.2011.00509.x
    From: man/Galton.Rd
  URI: doi.org/10.2139/ssrn.4448597
    From: man/PTX.Rd
  URI: doi.org/10.2139/ssrn.4448597
    From: man/PTXII.Rd
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘R4HCR’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking Rd files ... [0s/0s] NOTE
prepare_Rd: BCG.Rd:24-25: Dropping empty section \details
prepare_Rd: CA19.Rd:24-26: Dropping empty section \source
prepare_Rd: CBF.Rd:18-20: Dropping empty section \details
prepare_Rd: Cotinine.Rd:19-21: Dropping empty section \details
prepare_Rd: Doppler.Rd:24-26: Dropping empty section \references
prepare_Rd: Duplex.Rd:22-23: Dropping empty section \details
prepare_Rd: Duplex.Rd:27-29: Dropping empty section \references
prepare_Rd: Facemasks.Rd:22-24: Dropping empty section \source
prepare_Rd: Innova.Rd:22-24: Dropping empty section \source
prepare_Rd: LVD.Rd:19-21: Dropping empty section \source
prepare_Rd: LungCa.Rd:20-22: Dropping empty section \details
prepare_Rd: Malformation.Rd:26-27: Dropping empty section \references
prepare_Rd: MedSchools.Rd:23-25: Dropping empty section \source
prepare_Rd: Milk.Rd:22-24: Dropping empty section \source
prepare_Rd: NPguided.Rd:26-28: Dropping empty section \source
prepare_Rd: Nodules.Rd:31-33: Dropping empty section \source
prepare_Rd: PEFR.Rd:22-24: Dropping empty section \details
prepare_Rd: PEFR.Rd:25-27: Dropping empty section \source
prepare_Rd: Peptides.Rd:18-20: Dropping empty section \details
prepare_Rd: Peptides.Rd:21-23: Dropping empty section \source
prepare_Rd: Peptides.Rd:24-26: Dropping empty section \references
prepare_Rd: PlasmaVolume.Rd:19-21: Dropping empty section \details
prepare_Rd: SCAN.Rd:22-24: Dropping empty section \details
prepare_Rd: Scotland.Rd:16-18: Dropping empty section \details
prepare_Rd: Scotland.Rd:23-25: Dropping empty section \references
prepare_Rd: Systolic.Rd:25-27: Dropping empty section \details
prepare_Rd: Thrombosis.Rd:20-22: Dropping empty section \details
prepare_Rd: USCancerStats.Rd:24-26: Dropping empty section \source
prepare_Rd: Vaccinated.Rd:23-25: Dropping empty section \source
prepare_Rd: Vaccinated.Rd:26-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘Peptides’
Undocumented data sets:
  ‘Peptides’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/3s] ERROR
Running examples in ‘R4HCR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Facemasks
> ### Title: Face Masks while Exercising Trial (MERIT).
> ### Aliases: Facemasks
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Facemasks, package = "R4HCR")
> 
> # focus on cloth - none comparison
> t.test(delta ~ 1,
+        data = facemasks,
+        subset = comparison == "Cloth - None")
Error in eval(m$data, parent.frame()) : object 'facemasks' not found
Calls: t.test -> t.test.formula -> eval -> eval
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs