* using log directory ‘/srv/hornik/tmp/CRAN/R4HCR.Rcheck’ * using R Under development (unstable) (2024-07-22 r86913) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (1+b1) Debian flang-new version 18.1.8 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘R4HCR/DESCRIPTION’ ... OK * this is package ‘R4HCR’ version ‘0.0.0.9000’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/7s] NOTE Maintainer: ‘Jason L. Oke ’ New submission Version contains large components (0.0.0.9000) Found the following (possibly) invalid URLs: URL: https://ssrn.com/abstract=4448597 (moved to https://www.ssrn.com/abstract=4448597) From: man/PTX.Rd man/PTXII.Rd Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following URLs which should use \doi (with the DOI name only): File ‘BMT.Rd’: https://doi.org/10.1182/blood.V78.3.838.838 File ‘Galton.Rd’: https://doi.org/10.7910/DVN/T0HSJ1 https://doi.org/10.1111/j.1740-9713.2011.00509.x File ‘PTX.Rd’: http://dx.doi.org/10.2139/ssrn.4448597 File ‘PTXII.Rd’: http://dx.doi.org/10.2139/ssrn.4448597 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘R4HCR’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘FIT.rda’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking Rd files ... [0s/0s] NOTE prepare_Rd: BCG.Rd:24-25: Dropping empty section \details prepare_Rd: CA19.Rd:24-26: Dropping empty section \source prepare_Rd: CBF.Rd:18-20: Dropping empty section \details prepare_Rd: Cotinine.Rd:19-21: Dropping empty section \details prepare_Rd: Doppler.Rd:24-26: Dropping empty section \references prepare_Rd: Duplex.Rd:22-23: Dropping empty section \details prepare_Rd: Duplex.Rd:27-29: Dropping empty section \references prepare_Rd: Facemasks.Rd:22-24: Dropping empty section \source prepare_Rd: Innova.Rd:22-24: Dropping empty section \source prepare_Rd: LVD.Rd:19-21: Dropping empty section \source prepare_Rd: LungCa.Rd:20-22: Dropping empty section \details prepare_Rd: Malformation.Rd:26-27: Dropping empty section \references prepare_Rd: MedSchools.Rd:23-25: Dropping empty section \source prepare_Rd: Milk.Rd:22-24: Dropping empty section \source prepare_Rd: NPguided.Rd:26-28: Dropping empty section \source prepare_Rd: Nodules.Rd:31-33: Dropping empty section \source prepare_Rd: PEFR.Rd:22-24: Dropping empty section \details prepare_Rd: PEFR.Rd:25-27: Dropping empty section \source prepare_Rd: Peptide.Rd:18-20: Dropping empty section \details prepare_Rd: Peptide.Rd:21-23: Dropping empty section \source prepare_Rd: Peptide.Rd:24-26: Dropping empty section \references prepare_Rd: PlasmaVolume.Rd:19-21: Dropping empty section \details prepare_Rd: Potency.Rd:7-9: Dropping empty section \description prepare_Rd: Remission.Rd:7-9: Dropping empty section \description prepare_Rd: SCAN.Rd:22-24: Dropping empty section \details prepare_Rd: Scotland.Rd:16-18: Dropping empty section \details prepare_Rd: Scotland.Rd:23-25: Dropping empty section \references prepare_Rd: Systolic.Rd:25-27: Dropping empty section \details prepare_Rd: Thrombosis.Rd:20-22: Dropping empty section \details prepare_Rd: USCancerStats.Rd:7-9: Dropping empty section \description prepare_Rd: USCancerStats.Rd:24-26: Dropping empty section \source prepare_Rd: Vaccinated.Rd:7-9: Dropping empty section \description prepare_Rd: Vaccinated.Rd:23-25: Dropping empty section \source prepare_Rd: Vaccinated.Rd:26-28: Dropping empty section \references * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘Peptides’ Undocumented data sets: ‘Peptides’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING Data codoc mismatches from Rd file 'Cotinine.Rd': Variables in data frame 'Cotinine' Code: cotinine1 cotinine2 subject Docs: Cotinine1 Cotinine2 Subject Data codoc mismatches from Rd file 'Framingham.Rd': Variables in data frame 'Framingham' Code: BMI BPMeds TenYearCHD age cigsPerDay currentSmoker diaBP diabetes education glucose heartRate prevalentHyp prevalentStroke sex sysBP totChol Docs: age bmi bpmeds cigsperday currentsmoker diabetes diabp education glucose heartrate prevalenthyp prevalentstroke sex sysbp tenyearchd totchol Data codoc mismatches from Rd file 'NPguided.Rd': Variables in data frame 'NPguided' Code: clinicalassessment eventscntrl eventsnp studyid totalcntrl totalnp year Docs: comparator eventscntrl eventsnp studyid totalcntrl totalnp year Data codoc mismatches from Rd file 'OXFIT.Rd': Variables in data frame 'OXFIT' Code: _merge abdomass abdopain age agegrp albumin alkphosphatase alt anaemia anaemia_bt anyabnormal ast bloat bloodmiss bloodsympt bowelhabit cancer cancer_date cd constipation crp crp_high diarr dxdiff end fatigue fer_high fer_low fh fit_val fit_val7 fitdate fitgrp haemoglobin id ida inflam loc2 mch_low mcv_low mean_cell_hgb mean_cell_vol plat_bt platelets potfup rdw rectalpain serum_ferritin sex sixmocohort tarry thrombo twelvemocohort twenty4mocohort white_cells whitecells_high wl Docs: albumin alkphosphatase alt ast crp fit_val haemoglobin mean_cell_hgb mean_cell_vol platelets sex Data codoc mismatches from Rd file 'PEFR.Rd': Variables in data frame 'PEFR' Code: Child PEFR1 PEFR2 PEFR3 PEFR4 mean sd Docs: Child Mean PEFR1 PEFR2 PEFR3 PEFR4 PEFR4 Data codoc mismatches from Rd file 'Remission.Rd': Variables in data frame 'Remission' Code: Grp Sex WBC event time Docs: event grp sex time wbc Data codoc mismatches from Rd file 'SCAN.Rd': Variables in data frame 'SCAN' Code: c(1, 0, 2, 2, 1, 1, 2, 0, 0, 2, 3, 1, 3, 1, 0, 3, 0, 0, 2, 3, 0, 1, 2, 1, 0, 1, 0, 3, 1, 3, 0, 1, 0, 1, 0, 1, 2, 2, 0, 1, 2, 2, 0, 1, 1, 2, 1, 1, 1, 2, 2, 0, 1, 1, 2, 3, 1, 0, 1, 3, 1, 0, 3, 0, 1, 3, 0, 3, 0, 1, 2, 2, 3, 1, 0, 1, 2, 1, 1, 2, 1, 3, 0, 2, 1, 1, 3, 1, 3, 1, 1, 1, 2, 3, 1, 1, 1, 2, 1, 1, 1, 1, 0, 1, 1, 3, 1, 1, 1, 2, 0, 2, 1, 1, 2, 2, 2, 2, 0, 0, 1, 2, 1, 2, 1, 3, 3, 2, 3, 2, 1, 0, 0, 1, 2, 1, 1, 1, 3, 1, 2, 1, 2, 1, 1, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 2, 1, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 1, 1, 0, 1, 2, 3, 1, 0, 1, 3, 1, 2, 1, 1, 1, 0, 2, 3, 0, 1, 0, 1, 2, 1, 3, 1, 0, 1, 1, 3, 2, 0, 0, 1, 2, 2, 0, 0, 1, 0, 0, 0, 1, 3, 2, 2, 1, 3, 1, 1, 1, 3, 2, 0, 0, 3, 2, 1, 3, 2, 1, 1, 0, 2, 1, 3, 1, 2, 2, 3, 2, 1, 2, 3, 0, 2, 1, 3, 2, 1, 0, 1, 1, 2, 2, 1, 1, 0, 1, 3, 1, 2, 1, 2, 2, 2, 1, 3, 1, 2, 1, 1, 0, 1, 1, 1, 2, 1, 2, 1, 3, 3, 1, 3, 1, 3, 2, 1, 1, 0, 3, 1, 1, 3, 1, 3, 0, 2, 0, 2, 1, 2, 1, 0, 1, 1, 1, 2, 2, 1, 1, 2, 1, 0, 2, 1, 3, 0, 2, 0, 1, 2, 2, 1, 3, 1, 0, 2, 1, 3, 2, 2, 1, 3, 1, 0, 1, 2, 2, 0, 0, 1, 1, 1, 2, 3, 2, 1, 1, 0, 2, 2, 1, 2, 3, 0, 0, 0, 1, 3, 1, 2, 1, 3, 1, 0, 0, 1, 1, 0, 1, 0, 2, 2, 2, 1, 3, 3, 0, 3, 1, 3, 3, 2, 3, 2, 3, 0, 3, 3, 0, 0, 0, 1, 1, 1, 2, 2, 1, 2, 3, 1, 1, 2, 3, 1, 1, 0, 2, 0, 2, 1, 1, 2, 1, 3, 1, 0, 2, 1, 1, 2, 3, 0, 3, 3, 3, 2, 0, 2, 2, 1, 2, 2, 2, 1, 1, 3, 2, 2, 3, 2, 2, 1, 3, 0, 1, 3, 1, 1, 2, 2, 1, 2, 1, 3, 1, 2, 2, 2, 0, 2, 2, 1, 2, 3, 0, 3, 0, 1, 1, 0, 2, 1, 2, 1, 0, 1, 1, 2, 0, 1, 1, 1, 3, 2, 3, 2, 1, 2, 2, 2, 1, 1, 2, 2, 1, 1, 0, 2, 1, 3, 2, 1, 1, 1, 1, 1, 0, 2, 1, 1, 3, 3, 1, 2, 1, 3, 0, 0, 2, 2, 1, 1, 2, 1, 1, 2, 3, 2, 3, 0, 0, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 2, 0, 1, 0, 3, 3, 1, 0, 2, 1, 0, 3, 1, 1, 2, 0, 3, 2, 1, 1, 3, 0, 0, 2, 1, 3, 1, 2, 1, 1, 1, 2, 0, 2, 1, 3, 1, 0, 3, 1, 2, 1, 3, 3, 1, 0, 2, 0, 1, 2, 3, 1, 2, 1, 2, 3, 1, 1, 1, 0, 1, 2, 0, 1, 0, 2, 0, 0, 2, 1, 1, 0, 3, 0, 3, 2, 1, 1, 1, 3, 1, 2, 0, 0, 1, 1, 1, 2, 3, 2, 1, 0, 1, 1, 1, 2, 1, 2, 1, 0, 2, 3, 1, 2, 2, 3, 1, 2, 1, 1, 1, 1, 2, 1, 1, 0, 1, 3, 3, 2, 1, 3, 2, 1, 0, 2, 0, 1, 1, 0, 0, 0, 2, 1, 2, 1, 2, 2, 2, 2, 1, 3, 2, 1, 2, 2, 0, 1, 1, 3, 1, 1, 2, 1, 1, 1, 0, 1, 1, 2, 1, 1, 0, 0, 1, 3, 3, 1, 0, 1, 1, 1, 2, 1, 1, 1, 1, 0, 0, 0, 2, 0, 1, 1, 2, 1, 1, 0, 2, 3, 1, 2, 0, 2, 1, 1, 2, 2, 3, 1, 1, 0, 2, 2, 3, 2, 2, 1) c(137, 135, 149, 150, 100, 108, 121, 126, 125, 154, 133, 136, 86, 133, 101, 120, 133, 125, 155, 105, 134, 138, 132, 137, 130, 134, 170, 133, 139, 142, 165, 115, 144, 117, 154, 140, 124, 115, 154, 159, 112, 102, 146, 128, 138, 134, 139, 142, 131, 133, 100, 135, 137, 136, 128, 107, 131, 129, 132, 135, 145, 145, 108, 139, 131, 137, 149, 132, 159, 146, 121, 134, 119, 151, 128, 130, 137, 116, 144, 109, 101, 125, 130, 127, 117, 118, 124, 136, 114, 152, 129, 166, 130, 97, 113, 113, 142, 132, 147, 159, 128, 164, 165, 109, 136, 147, 131, 158, 133, 150, 134, 132, 103, 115, 151, 122, 123, 128, 131, 159, 134, 130, 143, 111, 89, 121, 137, 150, 127, 135, 147, 141, 145, 151, 90, 145, 133, 173, 107, 125, 137, 123, 106, 108, 150, 131, 113, 143, 109, 139, 125, 122, 127, 151, 137, 129, 126, 142, 150, 145, 127, 136, 124, 131, 144, 155, 144, 156, 168, 150, 147, 108, 129, 144, 130, 114, 112, 141, 134, 152, 153, 111, 123, 148, 141, 140, 135, 142, 118, 134, 121, 138, 141, 131, 148, 123, 150, 129, 157, 174, 133, 113, 146, 133, 150, 133, 125, 145, 138, 109, 84, 107, 127, 123, 120, 135, 127, 143, 175, 125, 127, 127, 150, 128, 127, 123, 138, 132, 127, 143, 139, 134, 95, 120, 136, 149, 114, 99, 121, 143, 123, 105, 107, 126, 102, 106, 123, 141, 171, 101, 108, 101, 128, 151, 155, 118, 108, 121, 120, 122, 79, 156, 101, 145, 138, 108, 140, 98, 151, 133, 151, 158, 125, 141, 126, 153, 116, 118, 121, 126, 112, 162, 128, 107, 93, 115, 139, 120, 129, 130, 138, 110, 118, 126, 135, 147, 120, 125, 120, 151, 146, 139, 144, 115, 104, 158, 101, 113, 153, 90, 125, 133, 113, 135, 120, 138, 147, 146, 118, 146, 125, 133, 130, 170, 148, 151, 143, 108, 143, 147, 142, 146, 153, 130, 144, 153, 135, 128, 136, 157, 101, 119, 135, 122, 148, 164, 142, 119, 133, 156, 129, 126, 139, 138, 132, 104, 138, 140, 136, 142, 124, 136, 118, 151, 109, 149, 152, 96, 142, 121, 120, 120, 146, 149, 151, 157, 105, 117, 130, 142, 141, 86, 144, 104, 134, 132, 123, 172, 142, 144, 113, 146, 106, 118, 119, 158, 136, 132, 120, 110, 121, 136, 135, 156, 162, 127, 158, 134, 120, 131, 124, 123, 113, 104, 136, 105, 131, 113, 88, 128, 116, 127, 139, 120, 101, 95, 104, 149, 147, 141, 119, 149, 152, 136, 114, 102, 129, 112, 134, 95, 156, 113, 139, 127, 133, 142, 153, 148, 128, 117, 136, 128, 74, 133, 151, 103, 163, 152, 143, 148, 130, 128, 110, 131, 127, 127, 127, 108, 120, 118, 149, 121, 172, 133, 120, 134, 144, 186, 156, 150, 94, 92, 129, 123, 149, 112, 128, 146, 109, 134, 150, 142, 117, 119, 127, 152, 142, 121, 111, 127, 146, 122, 139, 113, 99, 123, 150, 129, 151, 137, 63, 140, 138, 95, 121, 167, 120, 140, 130, 123, 110, 144, 144, 123, 135, 160, 109, 96, 148, 115, 144, 141, 134, 146, 112, 168, 147, 113, 143, 143, 121, 120, 131, 103, 125, 118, 133, 116, 124, 126, 152, 100, 156, 136, 126, 117, 137, 148, 124, 159, 134, 175, 158, 136, 149, 124, 168, 131, 151, 159, 131, 135, 127, 156, 155, 158, 121, 143, 128, 112, 128, 122, 139, 118, 115, 136, 87, 146, 150, 144, 115, 109, 112, 108, 115, 125, 127, 156, 125, 121, 120, 112, 139, 145, 139, 131, 137, 115, 150, 149, 135, 90, 147, 163, 98, 144, 150, 134, 129, 150, 119, 98, 128, 127, 112, 159, 139, 136, 141, 158, 104, 139, 108, 134, 113, 128, 118, 100, 121, 135, 129, 141, 135, 125, 125, 146, 159, 136, 134, 139, 166, 156, 135, 169, 112, 119, 131, 124, 126, 124, 143, 117, 153, 104, 136, 142, 145, 136, 157, 146, 150, 139, 117, 114, 76, 149, 129, 104, 141, 137, 148, 120, 135, 120, 122, 114, 130, 145, 141, 139, 118, 87, 132, 151, 129, 92, 132, 165, 150, 132, 126, 132, 128, 141, 157, 163, 133, 124, 130, 129, 125, 173, 111, 134, 133, 154, 138, 134, 128, 147, 151, 119, 115, 154, 101, 125, 119, 121, 113, 143, 113, 125, 145, 137, 148, 133, 131, 150, 137, 121, 127, 113, 126, 136, 139, 129, 118, 126, 171, 136) c(14, 9, 14, 34, 9, 8, 6, 5, 6, 8, 11, 6, 12, 10, 5, 10, 13, 5, 17, 12, 7, 7, 15, 13, 5, 4, 12, 24, 13, 8, 6, 9, 7, 5, 12, 10, 9, 8, 7, 8, 6, 27, 4, 12, 5, 14, 4, 14, 18, 10, 14, 9, 5, 8, 12, 10, 6, 5, 11, 11, 15, 17, 7, 6, 6, 26, 14, 6, 11, 14, 10, 12, 6, 14, 2, 8, 13, 6, 5, 11, 2, 10, 8, 7, 6, 5, 13, 14, 7, 17, 9, 13, 5, 7, 19, 10, 6, 10, 9, 12, 8, 8, 5, 11, 7, 7, 7, 7, 12, 8, 9, 4, 10, 11, 10, 11, 7, 40, 28, 14, 9, 10, 11, 7, 6, 5, 7, 7, 4, 5, 7, 7, 12, 9, 18, 4, 9, 17, 11, 15, 6, 6, 7, 9, 6, 11, 7, 7, 14, 17, 4, 7, 19, 9, 10, 7, 3, 12, 7, 10, 17, 10, 10, 7, 14, 8, 3, 3, 11, 6, 12, 8, 22, 6, 6, 11, 15, 17, 16, 14, 8, 5, 12, 4, 9, 16, 5, 7, 6, 6, 9, 7, 2, 17, 17, 6, 6, 2, 5, 10, 11, 10, 10, 14, 6, 24, 9, 15, 12, 10, 11, 6, 14, 29, 17, 19, 6, 8, 9, 17, 6, 6, 6, 5, 4, 11, 11, 11, 9, 12, 12, 5, 6, 9, 4, 14, 8, 6, 11, 6, 19, 12, 11, 10, 12, 9, 10, 8, 8, 8, 15, 8, 4, 7, 7, 8, 3, 16, 7, 14, 6, 6, 8, 6, 13, 8, 4, 8, 34, 6, 9, 13, 10, 14, 8, 6, 12, 5, 19, 10, 7, 11, 11, 5, 5, 5, 6, 11, 7, 8, 5, 6, 8, 9, 8, 7, 7, 13, 11, 10, 9, 15, 7, 15, 9, 9, 15, 4, 11, 9, 21, 10, 7, 17, 4, 9, 6, 12, 11, 7, 11, 11, 9, 9, 7, 11, 14, 4, 6, 11, 11, 6, 10, 10, 12, 15, 6, 10, 12, 7, 10, 11, 8, 9, 15, 8, 27, 24, 7, 6, 10, 7, 7, 7, 14, 6, 5, 11, 12, 11, 8, 7, 27, 5, 5, 7, 12, 4, 8, 4, 4, 4, 11, 10, 13, 6, 17, 27, 8, 11, 29, 11, 13, 19, 6, 8, 11, 14, 10, 16, 13, 11, 7, 17, 8, 16, 15, 15, 11, 10, 6, 32, 5, 11, 14, 12, 8, 12, 9, 7, 7, 11, 8, 5, 14, 7, 6, 19, 10, 10, 4, 5, 7, 8, 10, 2, 8, 13, 3, 14, 8, 18, 8, 3, 5, 6, 14, 11, 9, 15, 20, 16, 8, 17, 15, 11, 5, 10, 13, 12, 8, 11, 12, 8, 8, 10, 10, 8, 7, 10, 38, 10, 4, 10, 8, 11, 3, 8, 12, 7, 8, 11, 18, 9, 10, 12, 9, 7, 4, 18, 5, 8, 13, 15, 14, 11, 5, 19, 5, 6, 11, 19, 32, 10, 8, 8, 11, 6, 9, 21, 7, 17, 9, 6, 7, 7, 18, 11, 6, 14, 5, 9, 8, 12, 13, 21, 4, 11, 4, 7, 5, 19, 5, 5, 5, 4, 11, 11, 11, 5, 11, 28, 29, 11, 11, 10, 6, 20, 6, 9, 7, 6, 11, 7, 5, 17, 11, 4, 8, 20, 14, 4, 6, 10, 7, 37, 9, 7, 37, 10, 11, 11, 10, 8, 7, 8, 6, 12, 10, 6, 10, 5, 9, 12, 10, 7, 5, 9, 7, 5, 25, 6, 14, 26, 12, 4, 7, 12, 12, 13, 14, 8, 6, 8, 11, 13, 17, 5, 10, 13, 10, 9, 25, 5, 8, 6, 7, 8, 9, 10, 10, 4, 5, 7, 9, 8, 11, 13, 4, 13, 7, 9, 9, 10, 5, 8, 5, 11, 5, 10, 8, 20, 12, 11, 10, 15, 6, 7, 15, 7, 7, 8, 16, 8, 10, 9, 6, 8, 6, 10, 8, 7, 11, 9, 8, 7, 12, 5, 49, 9, 11, 5, 7, 5, 20, 32, 14, 9, 9, 10, 5, 12, 7, 5, 8, 7, 8, 4, 8, 8, 27, 15, 11, 14, 9, 3, 8, 9, 19, 7, 9, 4, 8, 10, 15, 14, 6, 7, 9, 9, 4, 10, 6, 3, 15, 10, 5, 10, 10, 17, 6, 13, 13, 12, 8, 3, 5, 6, 9, 11, 18, 13, 12, 4, 12, 20, 15, 14, 7, 6, 15, 26, 7, 6, 16, 9, 11, 7, 10, 8, 19, 5, 17, 4, 13, 9, 9, 8, 25, 11) c(16, 21, 43, 13, 12, 22, 13, 21, 21, 20, 14, 18, 21, 19, 9, 26, 29, 23, 14, 28, 16, 21, 23, 16, 15, 24, 6, 33, 11, 16, 6, 20, 17, 15, 30, 11, 18, 17, 25, 23, 18, 13, 18, 21, 78, 24, 11, 21, 10, 24, 42, 15, 44, 12, 13, 14, 14, 11, 25, 8, 26, 14, 8, 29, 13, 11, 13, 19, 83, 25, 15, 15, 12, 19, 10, 20, 12, 42, 19, 15, 11, 30, 17, 20, 24, 16, 11, 9, 11, 11, 32, 21, 15, 6, 20, 18, 14, 26, 16, 49, 15, 20, 11, 20, 12, 30, 21, 28, 71, 16, 18, 17, 25, 18, 52, 23, 21, 8, 21, 17, 11, 71, 14, 14, 11, 10, 22, 18, 11, 18, 9, 11, 11, 18, 22, 21, 14, 16, 12, 24, 10, 11, 56, 10, 12, 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6.48, 5.16, 17.04, 2.79, 9.37, 6.65, 8.73, 7.61, 6.43, 11.78, 14.83, 20.09, 4.78, 6.06, 8.31, 5, 12.25, 16.66, 11.32, 10.45, 6.25, 5.84, 11.65, 8.94, 4.71, 264, 8.8, 8.88, 11.27, 7.43, 6.86, 8.72, 7.91, 6.23, 9.75, 2.68, 13.71, 8.12, 16.77, 7.19, 8.48, 8.49, 12.8, 5.85, 11.33, 8.2, 6.29, 5.39, 8.77, 3.79, 12.18, 7.98, 6.39, 4.55, 6.35, 7.64, 14.29, 3.67, 6.83, 7.07, 7.99, 10.6, 6.86, 5.17, 8.41, 5.38, 7.01, 6.96, 5.38, 7.19, 10.69, 8.09, 6.15, 6.25, 9.63, 8.67, 7.44, 6.28, 5.85, 7.01, 3.68, 6.08, 7.35, 11.36, 16.56, 5.1, 12.37, 6.25, 9.21, 11.26, 8.71, 5.96, 12.69, 4.6, 9.55, 6.39, 8.47, 6.33, 7.01, 6.82, 8.18, 13.13, 3.68, 5.25, 6.95, 10, 10.06, 5.27, 7.79, 4.75, 11.81, 8.21, 4.91, 8.64, 9.47, 20.99, 12.18, 6.08, 8.94, 4.13, 11.57, 7.22, 11.65, 5.02, 11.4, 9.03, 7.38, 7.18, 7.94, 6.23, 4.83, 7.52, 7.85, 9.14, 9.1, 6.54, 11.73, 10, 8.22, 2.79, 7.75, 6.92, 6.32, 10.31, 8.41, 5.83, 5.42, 6.3, 6.04, 11.32, 7.89, 7.58, 6.17, 6.67, 13.04, 6.36, 9.7, 4.76, 5.25, 6.06, 7.33, 7.56, 10.23, 7.62, 18.55, 5.93, 5.24, 9.14, 5.11, 4.55, 6.66, 8, 5.33, 5.82, 6.07, 6.55, 6.73, 7.73, 6.99, 6.59, 8.01, 7.55, 4.79, 5.84, 9.23, 7.86, 5.48, 28.82, 8.09, 12.25, 12.06, 4.98, 8.28, 9.37, 5.53, 11.15, 9.78, 7.97, 8.22, 6.76, 4.07, 7.77, 10.24, 10.3, 10.77, 5.48, 5.78, 6.07, 5.36, 8.33, 7.58, 9.97, 7.66, 12.68, 6.52, 5.13, 8.69, 12.83, 3.37, 9.8, 7.32, 8.33, 6.66, 7.24, 11.31, 8.8, 5.07, 11.32, 6.08, 10.45, 14.05, 10.37, 11.55, 6.01, 9.83, 8.37, 8.66, 10.22, 5.6, 11.42, 7.43, 6.33, 5.16, 6.91, 9.63, 5.22, 6.06, 6.25, 5.41, 5.55, 14.49, 6.34, 3.88, 8.13, 9.71, 11.22, 8.48, 8.39, 11.65, 9.62, 6.86, 9.46, 2.6, 7.6, 10.97, 8, 7.49, 5.03, 20.99, 4.88, 6.81, 5.16, 8.98, 9.27, 7.29, 28.82, 12.68, 8.3, 7.77, 10.87, 6.46, 13.23, 5.39, 6.35, 8.37, 7.33, 6.64, 7.61, 5.63, 7.48, 9.5, 12.2, 5.55, 6.71, 6.81, 7.99, 5.76, 8.55, 8.3, 12.2, 4.78, 9.73, 12.68, 10.05, 7.3, 8.04, 5.41, 7.56, 9.75, 5.49, 7.37, 13.39, 11.94, 10.17, 4.27, 5.7, 6.25, 6.53, 7.21, 5.12, 10.91, 6.11, 9.6, 7.9, 7.22, 6.03, 5.55, 6.94, 9.46, 4.98, 27.1, 4.85, 7.48, 20.75, 5.25, 14.17, 6.65, 6, 7.74, 5.37, 8.8, 9.35, 5.98, 5.57, 6.76, 7.78, 7.22, 4.71, 5.63, 8.69, 6.17, 7.25, 15.81, 8.71, 14.29, 9.4, 43.21, 8.8, 6.95, 8.78, 8.82, 16.61, 6.91, 7.4, 6.36, 6.44, 9.51, 4.29, 6.99, 5.97, 11.52, 3.98, 5.85, 4.86, 9.48, 10.96, 5.1, 8.45, 5.06, 6.68, 10.46, 11.73, 12.06, 10.28, 6.61, 8.45, 11.74, 23.09, 10.01, 10.96, 8.61, 6.28, 7.61, 5.96, 8.86, 5.9, 10.6, 10.01, 8.71, 12.34, 7.23, 8.94, 11.57, 9.86, 6.46, 6.01, 5.22, 5.76, 7.45, 4.78, 5.53, 6.97, 8.17, 9.19, 15.74, 9.71, 9.1, 4.06, 7.59, 6.89, 3.37, 9.75, 7.2, 9.16, 8.63, 6.07, 6.71, 9.9, 8.36, 8.28, 8.04, 4.97, 5.29, 7.94, 5.7, 6.56, 8.58, 9.25, 9.7, 5.79, 8.59, 7.69, 8.59, 6.59, 12.57, 9.87, 16.32, 6.52, 6.48, 5.12, 7.5, 11.52, 4.01, 12.25, 9.3, 5.64, 6.73, 4.68, 9.1, 5.1, 7.14, 6.44, 6.43, 8.89, 9.62, 4.97, 8.44, 8.13, 12.25, 12.29, 7.98, 9.27, 8.51, 8.5, 7.31, 8.27, 7.96, 6.62, 5.52, 8.3, 19, 8.74, 4.51, 5.63, 11.18, 6.25, 8.06, 8.78, 8.13, 6.15, 8.38, 4.37, 10.95, 5.9, 8.59, 5.63, 8.04, 6.57, 6.08, 4.21, 7.33, 7.29, 7.86, 10.52, 6.52, 9.93, 9.9, 6.99, 7.49, 8.39, 9.99, 8.43, 14.49, 7.61, 8.29, 7.3, 7.26, 6.35, 5.84, 6.79, 9.03, 3.79, 5.86, 7.62, 8.59, 9.99, 5.18, 5.64, 10.48, 4.75, 6.64, 7.45, 3.48, 8.69, 13.84, 16.66, 10.87, 28.82, 5.4, 8.02, 18.55, 6.76, 5.22, 9.4, 5.61, 9.4, 7.65, 13.22, 7.75, 5.39, 7.42, 4.02, 4.62, 28.82, 4.74, 6.04) Docs: age alaninetrans albumin bilirubin calcium comorbidity haemoglobin whitebloodcell * checking Rd \usage sections ... OK * checking Rd contents ... NOTE Rd files without \description: ‘Potency.Rd’ ‘Remission.Rd’ ‘USCancerStats.Rd’ ‘Vaccinated.Rd’ * checking for unstated dependencies in examples ... WARNING 'library' or 'require' calls not declared from: ‘irr’ ‘mada’ ‘meta’ ‘metafor’ ‘survival’ 'data(package=)' call not declared from: ‘LateralFlow’ * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘R4HCR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: BCG > ### Title: Trials of BCG Vaccine against Tuberculosis. > ### Aliases: BCG > ### Keywords: datasets > > ### ** Examples > > require(meta) Loading required package: meta Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘meta’ > > data(BCG, package = "R4HCR") > > # Meta-analysis using relative risk summary measure > ma5 <- metabin( + sm = "RR", + event.e = cases1, + n.e = tot1, + event.c = cases0, + n.c = tot0, + studlab = trialnam, + data = BCG) Error in metabin(sm = "RR", event.e = cases1, n.e = tot1, event.c = cases0, : could not find function "metabin" Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 3 WARNINGs, 4 NOTEs