Package: jagstargets Check: tests New result: ERROR Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(jagstargets) > > test_check("jagstargets") [ FAIL 1 | WARN 0 | SKIP 10 | PASS 65 ] ══ Skipped tests (10) ══════════════════════════════════════════════════════════ • On CRAN (10): 'test-tar_jags.R:10:3', 'test-tar_jags.R:156:3', 'test-tar_jags_rep_dic.R:12:3', 'test-tar_jags_rep_draws.R:10:3', 'test-tar_jags_rep_draws.R:132:3', 'test-tar_jags_rep_summary.R:10:3', 'test-tar_jags_rep_summary.R:146:3', 'test-tar_jags_rep_summary.R:184:3', 'test-tar_jags_rep_summary.R:254:3', 'test-utils_data.R:23:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-tar_jags_df.R:83:3'): tar_jags_df() with dic ───────────────── sort(colnames(dic)) (`actual`) not equal to sort(c("dic", "pD")) (`expected`). `actual`: "dic" `expected`: "dic" "pD" [ FAIL 1 | WARN 0 | SKIP 10 | PASS 65 ] Error: Test failures Execution halted Package: jarbes Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘bmeta.Rmd’ using rmarkdown Quitting from lines 46-47 [unnamed-chunk-3] (bmeta.Rmd) Error: processing vignette 'bmeta.Rmd' failed with diagnostics: non-numeric argument to mathematical function --- failed re-building ‘bmeta.Rmd’ --- re-building ‘hmr.Rmd’ using rmarkdown Quitting from lines 614-615 [unnamed-chunk-6] (hmr.Rmd) Error: processing vignette 'hmr.Rmd' failed with diagnostics: non-numeric argument to mathematical function --- failed re-building ‘hmr.Rmd’ SUMMARY: processing the following files failed: ‘bmeta.Rmd’ ‘hmr.Rmd’ Error: Vignette re-building failed. Execution halted Package: MBNMAdose Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-3-1.png 1344x960 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23302 bytes Input file size = 24184 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19537 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19511 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18115 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18037 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 18037 Output IDAT size = 18037 bytes (5265 bytes decrease) Output file size = 18115 bytes (6069 bytes = 25.10% decrease) --- finished re-building ‘consistencychecking-3.Rmd’ --- re-building ‘dataexploration-1.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-2-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 218046 bytes Input file size = 218436 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 160681 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 160681 Output IDAT size = 160681 bytes (57365 bytes decrease) Output file size = 160759 bytes (57677 bytes = 26.40% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-4-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 144160 bytes Input file size = 144442 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 108770 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 108770 Output IDAT size = 108770 bytes (35390 bytes decrease) Output file size = 108848 bytes (35594 bytes = 24.64% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-5-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43024 bytes Input file size = 43162 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34497 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34497 Output IDAT size = 34497 bytes (8527 bytes decrease) Output file size = 34575 bytes (8587 bytes = 19.89% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-6-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34591 bytes Input file size = 34717 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28108 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28108 Output IDAT size = 28108 bytes (6483 bytes decrease) Output file size = 28186 bytes (6531 bytes = 18.81% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-7-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 157316 bytes Input file size = 157622 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 120267 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 120267 Output IDAT size = 120267 bytes (37049 bytes decrease) Output file size = 120345 bytes (37277 bytes = 23.65% decrease) Quitting from lines 198-202 [unnamed-chunk-9] (dataexploration-1.Rmd) Error: processing vignette 'dataexploration-1.Rmd' failed with diagnostics: non-numeric argument to mathematical function --- failed re-building ‘dataexploration-1.Rmd’ --- re-building ‘mbnmadose-overview.Rmd’ using rmarkdown --- finished re-building ‘mbnmadose-overview.Rmd’ --- re-building ‘metaregression-6.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/metaregression-6_files/figure-html/unnamed-chunk-7-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 74031 bytes Input file size = 74217 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 68235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 66890 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 66890 Output IDAT size = 66890 bytes (7141 bytes decrease) Output file size = 66968 bytes (7249 bytes = 9.77% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/metaregression-6_files/figure-html/unnamed-chunk-8-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82682 bytes Input file size = 82880 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72086 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72086 Output IDAT size = 72086 bytes (10596 bytes decrease) Output file size = 72164 bytes (10716 bytes = 12.93% decrease) --- finished re-building ‘metaregression-6.Rmd’ --- re-building ‘nma_in_mbnmadose.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/nma_in_mbnmadose_files/figure-html/unnamed-chunk-3-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16137 bytes Input file size = 16227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13294 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13294 Output IDAT size = 13294 bytes (2843 bytes decrease) Output file size = 13372 bytes (2855 bytes = 17.59% decrease) Quitting from lines 74-75 [unnamed-chunk-4] (nma_in_mbnmadose.Rmd) Error: processing vignette 'nma_in_mbnmadose.Rmd' failed with diagnostics: non-numeric argument to mathematical function --- failed re-building ‘nma_in_mbnmadose.Rmd’ --- re-building ‘outputs-4.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/outputs-4_files/figure-html/unnamed-chunk-6-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60424 bytes Input file size = 60586 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56032 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 54554 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 54554 Output IDAT size = 54554 bytes (5870 bytes decrease) Output file size = 54632 bytes (5954 bytes = 9.83% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/outputs-4_files/figure-html/unnamed-chunk-8-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64741 bytes Input file size = 64903 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56454 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56454 Output IDAT size = 56454 bytes (8287 bytes decrease) Output file size = 56532 bytes (8371 bytes = 12.90% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/outputs-4_files/figure-html/unnamed-chunk-8-2.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60823 bytes Input file size = 60985 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53900 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53900 Output IDAT size = 53900 bytes (6923 bytes decrease) Output file size = 53978 bytes (7007 bytes = 11.49% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/outputs-4_files/figure-html/unnamed-chunk-9-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115022 bytes Input file size = 115268 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95631 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 95631 Output IDAT size = 95631 bytes (19391 bytes decrease) Output file size = 95709 bytes (19559 bytes = 16.97% decrease) --- finished re-building ‘outputs-4.Rmd’ --- re-building ‘predictions-5.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/predictions-5_files/figure-html/unnamed-chunk-6-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 100434 bytes Input file size = 100656 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85513 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 85513 Output IDAT size = 85513 bytes (14921 bytes decrease) Output file size = 85591 bytes (15065 bytes = 14.97% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/predictions-5_files/figure-html/unnamed-chunk-7-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 127870 bytes Input file size = 128128 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103518 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103518 Output IDAT size = 103518 bytes (24352 bytes decrease) Output file size = 103596 bytes (24532 bytes = 19.15% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/predictions-5_files/figure-html/unnamed-chunk-8-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47017 bytes Input file size = 47155 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43009 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43009 Output IDAT size = 43009 bytes (4008 bytes decrease) Output file size = 43087 bytes (4068 bytes = 8.63% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/predictions-5_files/figure-html/unnamed-chunk-9-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129051 bytes Input file size = 129309 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 99265 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 99265 Output IDAT size = 99265 bytes (29786 bytes decrease) Output file size = 99343 bytes (29966 bytes = 23.17% decrease) --- finished re-building ‘predictions-5.Rmd’ --- re-building ‘runmbnmadose-2.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/runmbnmadose-2_files/figure-html/unnamed-chunk-13-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 101206 bytes Input file size = 101428 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 78412 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 78412 Output IDAT size = 78412 bytes (22794 bytes decrease) Output file size = 78490 bytes (22938 bytes = 22.62% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/runmbnmadose-2_files/figure-html/unnamed-chunk-14-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33742 bytes Input file size = 33868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26932 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26932 Output IDAT size = 26932 bytes (6810 bytes decrease) Output file size = 27010 bytes (6858 bytes = 20.25% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/runmbnmadose-2_files/figure-html/unnamed-chunk-15-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34220 bytes Input file size = 34346 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28128 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28128 Output IDAT size = 28128 bytes (6092 bytes decrease) Output file size = 28206 bytes (6140 bytes = 17.88% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAdose.Rcheck/vign_test/MBNMAdose/vignettes/runmbnmadose-2_files/figure-html/unnamed-chunk-15-2.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31005 bytes Input file size = 31119 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25151 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25151 Output IDAT size = 25151 bytes (5854 bytes decrease) Output file size = 25229 bytes (5890 bytes = 18.93% decrease) Quitting from lines 721-722 [unnamed-chunk-16] (runmbnmadose-2.Rmd) Error: processing vignette 'runmbnmadose-2.Rmd' failed with diagnostics: non-numeric argument to mathematical function --- failed re-building ‘runmbnmadose-2.Rmd’ SUMMARY: processing the following files failed: ‘dataexploration-1.Rmd’ ‘nma_in_mbnmadose.Rmd’ ‘runmbnmadose-2.Rmd’ Error: Vignette re-building failed. Execution halted Package: MBNMAtime Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-1.png 672x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19052 bytes Input file size = 19154 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14912 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14912 Output IDAT size = 14912 bytes (4140 bytes decrease) Output file size = 14990 bytes (4164 bytes = 21.74% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-2.png 672x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33676 bytes Input file size = 33802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26019 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26019 Output IDAT size = 26019 bytes (7657 bytes decrease) Output file size = 26097 bytes (7705 bytes = 22.79% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-11-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31267 bytes Input file size = 31381 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25404 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25404 Output IDAT size = 25404 bytes (5863 bytes decrease) Output file size = 25482 bytes (5899 bytes = 18.80% decrease) --- finished re-building ‘consistencychecking-3.Rmd’ --- re-building ‘dataexploration-1.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-1-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19072 bytes Input file size = 19174 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16320 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16320 Output IDAT size = 16320 bytes (2752 bytes decrease) Output file size = 16398 bytes (2776 bytes = 14.48% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-3-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119981 bytes Input file size = 120227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88771 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88771 Output IDAT size = 88771 bytes (31210 bytes decrease) Output file size = 88849 bytes (31378 bytes = 26.10% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25739 bytes Input file size = 25853 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19919 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19919 Output IDAT size = 19919 bytes (5820 bytes decrease) Output file size = 19997 bytes (5856 bytes = 22.65% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 131032 bytes Input file size = 131290 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94428 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94428 Output IDAT size = 94428 bytes (36604 bytes decrease) Output file size = 94506 bytes (36784 bytes = 28.02% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.time-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79747 bytes Input file size = 79933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57953 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 57953 Output IDAT size = 57953 bytes (21794 bytes decrease) Output file size = 58031 bytes (21902 bytes = 27.40% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/obese.time-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64122 bytes Input file size = 64284 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45061 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45061 Output IDAT size = 45061 bytes (19061 bytes decrease) Output file size = 45139 bytes (19145 bytes = 29.78% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.binplot-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88609 bytes Input file size = 88807 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65537 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65537 Output IDAT size = 65537 bytes (23072 bytes decrease) Output file size = 65615 bytes (23192 bytes = 26.12% decrease) --- finished re-building ‘dataexploration-1.Rmd’ --- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown --- finished re-building ‘mbnmatime-overview.Rmd’ --- re-building ‘outputs-4.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 91882 bytes Input file size = 92092 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66895 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66895 Output IDAT size = 66895 bytes (24987 bytes decrease) Output file size = 66973 bytes (25119 bytes = 27.28% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21080 bytes Input file size = 21182 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17664 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17664 Output IDAT size = 17664 bytes (3416 bytes decrease) Output file size = 17742 bytes (3440 bytes = 16.24% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-12-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49357 bytes Input file size = 49507 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36301 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36301 Output IDAT size = 36301 bytes (13056 bytes decrease) Output file size = 36379 bytes (13128 bytes = 26.52% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-13-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 81682 bytes Input file size = 81868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62036 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62036 Output IDAT size = 62036 bytes (19646 bytes decrease) Output file size = 62114 bytes (19754 bytes = 24.13% decrease) --- finished re-building ‘outputs-4.Rmd’ --- re-building ‘predictions-5.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 66929 bytes Input file size = 67103 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52641 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52641 Output IDAT size = 52641 bytes (14288 bytes decrease) Output file size = 52719 bytes (14384 bytes = 21.44% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-7-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31128 bytes Input file size = 31242 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24122 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24122 Output IDAT size = 24122 bytes (7006 bytes decrease) Output file size = 24200 bytes (7042 bytes = 22.54% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75722 bytes Input file size = 75908 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58760 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58760 Output IDAT size = 58760 bytes (16962 bytes decrease) Output file size = 58838 bytes (17070 bytes = 22.49% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55218 bytes Input file size = 55368 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41479 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41479 Output IDAT size = 41479 bytes (13739 bytes decrease) Output file size = 41557 bytes (13811 bytes = 24.94% decrease) --- finished re-building ‘predictions-5.Rmd’ --- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown Quitting from lines 122-123 [unnamed-chunk-3] (runmbnmatime-2.Rmd) Error: processing vignette 'runmbnmatime-2.Rmd' failed with diagnostics: non-numeric argument to mathematical function --- failed re-building ‘runmbnmatime-2.Rmd’ SUMMARY: processing the following file failed: ‘runmbnmatime-2.Rmd’ Error: Vignette re-building failed. Execution halted Package: simmr Check: tests New result: ERROR Running ‘testthat.R’ [58s/58s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(simmr) Loading required package: R2jags Loading required package: rjags Loading required package: coda Linked to JAGS 4.3.2 Loaded modules: basemod,bugs Attaching package: 'R2jags' The following object is masked from 'package:coda': traceplot Loading required package: ggplot2 > library(vdiffr) > > co <- function(expr) capture.output(expr, file = "NUL") > > test_check("simmr") [ FAIL 1 | WARN 0 | SKIP 4 | PASS 256 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test_simmr_mcmc_full.R:27:3', 'test_simmr_mcmc_full.R:52:3', 'test_simmr_mcmc_full.R:75:3', 'test_simmr_mcmc_full.R:159:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-simmr_ffvb.R:86:3'): simmr_ffvb_compare ──────────────────────── Error in `eval(code, test_env)`: Assertion on 'diff_sig < 0.01' failed: Must be TRUE. Backtrace: ▆ 1. └─checkmate::assert_true(diff_sig < 0.01) at test-simmr_ffvb.R:86:3 2. └─checkmate::makeAssertion(x, res, .var.name, add) 3. └─checkmate:::mstop(...) [ FAIL 1 | WARN 0 | SKIP 4 | PASS 256 ] Error: Test failures Execution halted