R Under development (unstable) (2025-02-23 r87804 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("R.utils") Loading required package: R.oo Loading required package: R.methodsS3 R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help. R.oo v1.27.0 (2024-11-01 18:00:02 UTC) successfully loaded. See ?R.oo for help. Attaching package: 'R.oo' The following object is masked from 'package:R.methodsS3': throw The following objects are masked from 'package:methods': getClasses, getMethods The following objects are masked from 'package:base': attach, detach, load, save R.utils v2.13.0 successfully loaded. See ?R.utils for help. Attaching package: 'R.utils' The following object is masked from 'package:utils': timestamp The following objects are masked from 'package:base': cat, commandArgs, getOption, isOpen, nullfile, parse, use, warnings > > message("CRAN:") CRAN: > str(as.list(parseRepos("CRAN"))) List of 1 $ CRAN: chr "https://bioconductor.statistik.tu-dortmund.de/cran" > > message("braju.com:") braju.com: > str(as.list(parseRepos("braju.com"))) List of 1 $ braju.com: chr "https://braju.com/R" > > message("CRAN + braju.com:") CRAN + braju.com: > str(as.list(parseRepos(c("CRAN", "braju.com")))) List of 2 $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" $ braju.com: chr "https://braju.com/R" > > message("braju.com + CRAN:") braju.com + CRAN: > str(as.list(parseRepos(c("braju.com", "CRAN")))) List of 2 $ braju.com: chr "https://braju.com/R" $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" > > message("All CRAN related repositories:") All CRAN related repositories: > str(as.list(parseRepos("[[CRAN]]"))) List of 1 $ CRAN: chr "https://bioconductor.statistik.tu-dortmund.de/cran" > > message("All BioC related repositories:") All BioC related repositories: > str(as.list(parseRepos("[[BioC]]"))) List of 3 $ BioCsoft: chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/bioc" $ BioCann : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/annotation" $ BioCexp : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/experiment" > > message("braju.com + all CRAN related repositories:") braju.com + all CRAN related repositories: > str(as.list(parseRepos(c("braju.com", "[[CRAN]]")))) List of 2 $ braju.com: chr "https://braju.com/R" $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" > > message("All CRAN related repositories + braju.com:") All CRAN related repositories + braju.com: > str(as.list(parseRepos(c("[[CRAN]]", "braju.com")))) List of 2 $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" $ braju.com: chr "https://braju.com/R" > > message("All CRAN related + BioC related repositories:") All CRAN related + BioC related repositories: > str(as.list(parseRepos(c("[[CRAN]]", "[[BioC]]")))) List of 4 $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" $ BioCsoft: chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/bioc" $ BioCann : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/annotation" $ BioCexp : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/experiment" > > message("All BioC related + CRAN related repositories:") All BioC related + CRAN related repositories: > str(as.list(parseRepos(c("[[BioC]]", "[[CRAN]]")))) List of 4 $ BioCsoft: chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/bioc" $ BioCann : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/annotation" $ BioCexp : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/experiment" $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" > > message("Mainstream (CRAN and BioC related) repositories (only):") Mainstream (CRAN and BioC related) repositories (only): > str(as.list(parseRepos("[[mainstream]]"))) List of 4 $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" $ BioCsoft: chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/bioc" $ BioCann : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/annotation" $ BioCexp : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/experiment" > > message("An explicit repository URL:") An explicit repository URL: > str(as.list(parseRepos("http://r-forge.r-project.org"))) List of 1 $ : chr "http://r-forge.r-project.org" > > message("An explicit repository URL + mainstream:") An explicit repository URL + mainstream: > str(as.list(parseRepos(c("http://r-forge.r-project.org", "[[mainstream]]")))) List of 5 $ : chr "http://r-forge.r-project.org" $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" $ BioCsoft: chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/bioc" $ BioCann : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/annotation" $ BioCexp : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/experiment" > > message("Repositories according to option 'repos':") Repositories according to option 'repos': > str(as.list(parseRepos("[[current]]"))) List of 1 $ CRAN: chr "https://bioconductor.statistik.tu-dortmund.de/cran" > > message("All repositories known to this system:") All repositories known to this system: > str(as.list(parseRepos("[[all]]"))) List of 5 $ CRAN : chr "https://bioconductor.statistik.tu-dortmund.de/cran" $ BioCsoft : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/bioc" $ BioCann : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/annotation" $ BioCexp : chr "https://bioconductor.statistik.tu-dortmund.de/packages/3.21/data/experiment" $ braju.com: chr "https://braju.com/R" > > proc.time() user system elapsed 0.23 0.09 0.26