R Under development (unstable) (2023-11-16 r85542 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("R.utils") Loading required package: R.oo Loading required package: R.methodsS3 R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help. R.oo v1.25.0 (2022-06-12 02:20:02 UTC) successfully loaded. See ?R.oo for help. Attaching package: 'R.oo' The following object is masked from 'package:R.methodsS3': throw The following objects are masked from 'package:methods': getClasses, getMethods The following objects are masked from 'package:base': attach, detach, load, save R.utils v2.12.3 successfully loaded. See ?R.utils for help. Attaching package: 'R.utils' The following object is masked from 'package:utils': timestamp The following objects are masked from 'package:base': cat, commandArgs, getOption, isOpen, nullfile, parse, warnings > > message("CRAN:") CRAN: > str(as.list(parseRepos("CRAN"))) List of 1 $ CRAN: chr "https://cran.r-project.org" Warning message: In parseRepos("CRAN") : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("braju.com:") braju.com: > str(as.list(parseRepos("braju.com"))) List of 1 $ braju.com: chr "https://braju.com/R" > > message("CRAN + braju.com:") CRAN + braju.com: > str(as.list(parseRepos(c("CRAN", "braju.com")))) List of 2 $ CRAN : chr "https://cran.r-project.org" $ braju.com: chr "https://braju.com/R" Warning message: In parseRepos(c("CRAN", "braju.com")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("braju.com + CRAN:") braju.com + CRAN: > str(as.list(parseRepos(c("braju.com", "CRAN")))) List of 2 $ braju.com: chr "https://braju.com/R" $ CRAN : chr "https://cran.r-project.org" Warning message: In parseRepos(c("braju.com", "CRAN")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("All CRAN related repositories:") All CRAN related repositories: > str(as.list(parseRepos("[[CRAN]]"))) List of 3 $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" Warning message: In parseRepos("[[CRAN]]") : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("All BioC related repositories:") All BioC related repositories: > str(as.list(parseRepos("[[BioC]]"))) List of 3 $ BioCsoft: chr "https://bioconductor.org/packages/3.18/bioc" $ BioCann : chr "https://bioconductor.org/packages/3.18/data/annotation" $ BioCexp : chr "https://bioconductor.org/packages/3.18/data/experiment" > > message("braju.com + all CRAN related repositories:") braju.com + all CRAN related repositories: > str(as.list(parseRepos(c("braju.com", "[[CRAN]]")))) List of 4 $ braju.com: chr "https://braju.com/R" $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" Warning message: In parseRepos(c("braju.com", "[[CRAN]]")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("All CRAN related repositories + braju.com:") All CRAN related repositories + braju.com: > str(as.list(parseRepos(c("[[CRAN]]", "braju.com")))) List of 4 $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" $ braju.com: chr "https://braju.com/R" Warning message: In parseRepos(c("[[CRAN]]", "braju.com")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("All CRAN related + BioC related repositories:") All CRAN related + BioC related repositories: > str(as.list(parseRepos(c("[[CRAN]]", "[[BioC]]")))) List of 6 $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" $ BioCsoft : chr "https://bioconductor.org/packages/3.18/bioc" $ BioCann : chr "https://bioconductor.org/packages/3.18/data/annotation" $ BioCexp : chr "https://bioconductor.org/packages/3.18/data/experiment" Warning message: In parseRepos(c("[[CRAN]]", "[[BioC]]")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("All BioC related + CRAN related repositories:") All BioC related + CRAN related repositories: > str(as.list(parseRepos(c("[[BioC]]", "[[CRAN]]")))) List of 6 $ BioCsoft : chr "https://bioconductor.org/packages/3.18/bioc" $ BioCann : chr "https://bioconductor.org/packages/3.18/data/annotation" $ BioCexp : chr "https://bioconductor.org/packages/3.18/data/experiment" $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" Warning message: In parseRepos(c("[[BioC]]", "[[CRAN]]")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("Mainstream (CRAN and BioC related) repositories (only):") Mainstream (CRAN and BioC related) repositories (only): > str(as.list(parseRepos("[[mainstream]]"))) List of 6 $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" $ BioCsoft : chr "https://bioconductor.org/packages/3.18/bioc" $ BioCann : chr "https://bioconductor.org/packages/3.18/data/annotation" $ BioCexp : chr "https://bioconductor.org/packages/3.18/data/experiment" Warning message: In parseRepos("[[mainstream]]") : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("An explicit repository URL:") An explicit repository URL: > str(as.list(parseRepos("http://r-forge.r-project.org"))) List of 1 $ : chr "http://r-forge.r-project.org" > > message("An explicit repository URL + mainstream:") An explicit repository URL + mainstream: > str(as.list(parseRepos(c("http://r-forge.r-project.org", "[[mainstream]]")))) List of 7 $ : chr "http://r-forge.r-project.org" $ CRAN : chr "https://cran.r-project.org" $ CRANextra: chr "https://www.stats.ox.ac.uk/pub/RWin" $ CRAN : chr "@CRAN@" $ BioCsoft : chr "https://bioconductor.org/packages/3.18/bioc" $ BioCann : chr "https://bioconductor.org/packages/3.18/data/annotation" $ BioCexp : chr "https://bioconductor.org/packages/3.18/data/experiment" Warning message: In parseRepos(c("http://r-forge.r-project.org", "[[mainstream]]")) : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("Repositories according to option 'repos':") Repositories according to option 'repos': > str(as.list(parseRepos("[[current]]"))) List of 1 $ CRAN: chr "https://cran.r-project.org" Warning message: In parseRepos("[[current]]") : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > message("All repositories known to this system:") All repositories known to this system: > str(as.list(parseRepos("[[all]]"))) List of 9 $ CRAN : chr "https://cran.r-project.org" $ BioCsoft : chr "https://bioconductor.org/packages/3.18/bioc" $ BioCann : chr "https://bioconductor.org/packages/3.18/data/annotation" $ BioCexp : chr "https://bioconductor.org/packages/3.18/data/experiment" $ CRANextra : chr "https://www.stats.ox.ac.uk/pub/RWin" $ R-Forge : chr "https://R-Forge.R-project.org" $ rforge.net: chr "https://www.rforge.net" $ braju.com : chr "https://braju.com/R" $ CRAN : chr "@CRAN@" Warning message: In parseRepos("[[all]]") : Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org' > > proc.time() user system elapsed 0.37 0.10 0.46