downloading reverse dependencies ... downloading aroma.affymetrix_3.2.2.tar.gz ... ok downloading aroma.cn_1.7.1.tar.gz ... ok downloading aroma.core_3.3.1.tar.gz ... ok downloading csodata_1.5.0.tar.gz ... ok downloading DiceView_3.1-0.tar.gz ... ok downloading facmodTS_1.0.tar.gz ... ok downloading PCRA_1.2.tar.gz ... ok downloading precommit_0.4.3.tar.gz ... ok downloading PSCBS_0.68.0.tar.gz ... ok downloading R.filesets_2.15.1.tar.gz ... ok downloading R.rsp_0.46.0.tar.gz ... ok downloading repmis_0.5.tar.gz ... ok downloading RKorAPClient_1.0.0.tar.gz ... ok downloading scholar_0.2.4.tar.gz ... ok downloading stepR_2.1-10.tar.gz ... ok downloading styler_1.10.3.tar.gz ... ok downloading TreeTools_1.13.1.tar.gz ... ok downloading jointseg_1.0.2.tar.gz ... ok downloading ragtop_1.1.1.tar.gz ... ok installing dependencies ‘acnr’, ‘affxparser’, ‘affy’, ‘AffymetrixDataTestFiles’, ‘affyPLM’, ‘aroma.apd’, ‘aroma.core’, ‘aroma.light’, ‘ascii’, ‘BondValuation’, ‘dChipIO’, ‘DiceEval’, ‘expectile’, ‘gcrma’, ‘GLAD’, ‘gsmoothr’, ‘HaarSeg’, ‘lowpassFilter’, ‘mpcbs’, ‘oligo’, ‘oligoClasses’, ‘pdInfoBuilder’, ‘PortfolioAnalytics’, ‘prettycode’, ‘PSCBS’, ‘PTXQC’, ‘purrrlyr’, ‘Quandl’, ‘R.cache’, ‘R.filesets’, ‘R.oo’, ‘rjstat’, ‘rlibkriging’, ‘sfit’ Warning: packages ‘sfit’, ‘expectile’, ‘HaarSeg’, ‘mpcbs’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘awsMethods’, ‘R.huge’, ‘affyio’, ‘aws’, ‘ROI.plugin.symphony’, ‘R6P’, ‘rmzqc’ begin installing package ‘awsMethods’ begin installing package ‘ROI.plugin.symphony’ begin installing package ‘affyio’ begin installing package ‘R6P’ begin installing package ‘gsmoothr’ begin installing package ‘affxparser’ begin installing package ‘AffymetrixDataTestFiles’ begin installing package ‘dChipIO’ begin installing package ‘rjstat’ begin installing package ‘rlibkriging’ begin installing package ‘DiceEval’ begin installing package ‘ascii’ begin installing package ‘purrrlyr’ begin installing package ‘lowpassFilter’ begin installing package ‘prettycode’ begin installing package ‘acnr’ begin installing package ‘BondValuation’ begin installing package ‘Quandl’ begin installing package ‘R.oo’ * installing *source* package ‘awsMethods’ ... ** this is package ‘awsMethods’ version ‘1.1-1’ ** package ‘awsMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8ZiKTy/R.INSTALL1430802853f092/awsMethods/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c omp_funcs.c -o omp_funcs.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o awsMethods.so init.o omp_funcs.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8ZiKTy/R.INSTALL1430802853f092/awsMethods/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-awsMethods/00new/awsMethods/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (awsMethods) begin installing package ‘aws’ * installing *source* package ‘prettycode’ ... ** this is package ‘prettycode’ version ‘1.1.0’ ** package ‘prettycode’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettycode) * installing *source* package ‘dChipIO’ ... ** this is package ‘dChipIO’ version ‘0.1.5’ ** package ‘dChipIO’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dChipIO) * installing *source* package ‘rjstat’ ... ** this is package ‘rjstat’ version ‘0.4.3’ ** package ‘rjstat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjstat) * installing *source* package ‘acnr’ ... ** this is package ‘acnr’ version ‘1.0.0’ ** package ‘acnr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (acnr) * installing *source* package ‘gsmoothr’ ... ** this is package ‘gsmoothr’ version ‘0.1.7’ ** package ‘gsmoothr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpedw7O5/R.INSTALL14308f22322b23/gsmoothr/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tmean.c -o tmean.o tmean.c: In function ‘tmeanPos’: tmean.c:101:39: warning: variable ‘xx’ set but not used [-Wunused-but-set-variable] 101 | double dummy[1000], sm=0., tr=*_tr, xx; | ^~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gsmoothr.so init.o tmean.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpedw7O5/R.INSTALL14308f22322b23/gsmoothr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gsmoothr/00new/gsmoothr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsmoothr) * installing *source* package ‘ROI.plugin.symphony’ ... ** this is package ‘ROI.plugin.symphony’ version ‘1.0-0’ ** package ‘ROI.plugin.symphony’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help No man pages found in package ‘ROI.plugin.symphony’ *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.symphony) begin installing package ‘PortfolioAnalytics’ * installing *source* package ‘Quandl’ ... ** this is package ‘Quandl’ version ‘2.11.0’ ** package ‘Quandl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Quandl) * installing *source* package ‘R6P’ ... ** this is package ‘R6P’ version ‘0.4.0’ ** package ‘R6P’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6P) begin installing package ‘rmzqc’ * installing *source* package ‘DiceEval’ ... ** this is package ‘DiceEval’ version ‘1.6.1’ ** package ‘DiceEval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiceEval) * installing *source* package ‘R.oo’ ... ** this is package ‘R.oo’ version ‘1.27.1’ ** package ‘R.oo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function getClasses to getClasses.default, which was defined in environment R.oo. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.oo) begin installing package ‘R.huge’ begin installing package ‘aroma.light’ begin installing package ‘R.cache’ * installing *source* package ‘rmzqc’ ... ** this is package ‘rmzqc’ version ‘0.5.5’ ** package ‘rmzqc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmzqc) begin installing package ‘PTXQC’ * installing *source* package ‘AffymetrixDataTestFiles’ ... ** this is package ‘AffymetrixDataTestFiles’ version ‘0.46.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AffymetrixDataTestFiles) * installing *source* package ‘R.cache’ ... ** this is package ‘R.cache’ version ‘0.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.cache) begin installing package ‘R.filesets’ * installing *source* package ‘R.huge’ ... ** this is package ‘R.huge’ version ‘0.10.1’ ** package ‘R.huge’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function nrow to nrow.default, which was defined in environment R.huge. Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function ncol to ncol.default, which was defined in environment R.huge. Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function rownames to rownames.default, which was defined in environment R.huge. Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function colnames to colnames.default, which was defined in environment R.huge. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.huge) begin installing package ‘aroma.apd’ * installing *source* package ‘aroma.light’ ... ** this is package ‘aroma.light’ version ‘3.38.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aroma.light) begin installing package ‘PSCBS’ * installing *source* package ‘ascii’ ... ** this is package ‘ascii’ version ‘2.6’ ** package ‘ascii’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ascii) * installing *source* package ‘affyio’ ... ** this is package ‘affyio’ version ‘1.78.0’ ** using staged installation checking for gcc... gcc-14 -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 -std=gnu23 accepts -g... yes checking for gcc-14 -std=gnu23 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-14 -std=gnu23 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes checking for pthread_create in -lpthread... yes checking if we can use pthreads... yes checking if PTHREAD_STACK_MIN is defined... yes configure: Enabling threading for affyio configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp06T0b7/R.INSTALL1430711baaaeac/affyio/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fread_functions.c -o fread_functions.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init_package.c -o init_package.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_abatch.c -o read_abatch.o read_abatch.c: In function ‘read_cel_file_intensities’: read_abatch.c:656:176: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:656:182: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:665:146: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:665:152: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:677:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:677:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:689:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:689:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_cel_file_stddev’: read_abatch.c:764:178: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:764:184: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:774:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:774:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:785:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:785:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:795:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:795:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:805:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:805:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_cel_file_npixels’: read_abatch.c:870:178: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:870:184: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:879:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:879:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:890:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:890:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:901:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:901:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:913:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:913:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:924:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:924:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_intensities’: read_abatch.c:1567:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1567:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1578:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1578:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1589:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1589:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_stddev’: read_abatch.c:1665:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1665:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1677:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1677:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1689:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1689:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1701:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1701:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_npixels’: read_abatch.c:1769:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1769:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1780:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1780:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1791:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1791:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1801:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1801:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1811:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1811:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘gzbinary_get_detailed_header_info’: read_abatch.c:3410:3: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 3410 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^ read_abatch.c:3410:65: note: length computed here 3410 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_abatch.c: In function ‘binary_get_detailed_header_info’: read_abatch.c:2661:3: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2661 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^ read_abatch.c:2661:65: note: length computed here 2661 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_bpmap.c -o read_bpmap.o read_bpmap.c: In function ‘ReadBPMAPFileIntoRList’: read_bpmap.c:849:39: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=] 849 | error("Unable to open the file %s",filename); | ~^ ~~~~~~~~ | | | | | SEXP {aka struct SEXPREC *} | char * read_bpmap.c:698:27: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 698 | sprintf(buf, "%d", j+1); | ^ In file included from /usr/include/stdio.h:970, from /home/hornik/tmp/R/include/R.h:44, from read_bpmap.c:23: In function ‘sprintf’, inlined from ‘readBPMAPSeqIdPositionInfo’ at read_bpmap.c:698:4, inlined from ‘ReadBPMAPFileIntoRList’ at read_bpmap.c:873:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ read_bpmap.c: In function ‘ReadBPMAPFileIntoRList’: read_bpmap.c:655:27: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 655 | sprintf(buf, "%d", j+1); | ^ In function ‘sprintf’, inlined from ‘readBPMAPSeqIdPositionInfo’ at read_bpmap.c:655:4, inlined from ‘ReadBPMAPFileIntoRList’ at read_bpmap.c:873:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ read_bpmap.c: In function ‘ReadBPMAPFileIntoRList’: read_bpmap.c:603:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 603 | sprintf(buf, "%d", j+1); | ^ In function ‘sprintf’, inlined from ‘readBPMAPSeqIdPositionInfo’ at read_bpmap.c:603:2, inlined from ‘ReadBPMAPFileIntoRList’ at read_bpmap.c:873:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_cdf_xda.c -o read_cdf_xda.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_cdffile2.c -o read_cdffile2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_celfile_generic.c -o read_celfile_generic.o read_celfile_generic.c: In function ‘generic_get_detailed_header_info’: read_celfile_generic.c:272:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 272 | strncpy(header_info->AlgorithmParameters,"Percentile:",11); | ^ read_celfile_generic.c:294:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 294 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11); | ^ read_celfile_generic.c:315:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 315 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12); | ^ read_celfile_generic.c:336:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 336 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11); | ^ read_celfile_generic.c:357:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 357 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11); | ^ read_celfile_generic.c:378:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation] 378 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14); | ^ read_celfile_generic.c:399:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation] 399 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17); | ^ read_celfile_generic.c:420:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 420 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18); | ^ read_celfile_generic.c:441:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation] 441 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26); | ^ read_celfile_generic.c:464:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 464 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18); | ^ read_celfile_generic.c:488:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 488 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20); | ^ read_celfile_generic.c:510:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 510 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20); | ^ read_celfile_generic.c:532:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 532 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12); | ^ read_celfile_generic.c:553:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation] 553 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16); | ^ read_celfile_generic.c:575:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 575 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11); | ^ read_celfile_generic.c:597:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation] 597 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8); | ^ read_celfile_generic.c: In function ‘gzgeneric_get_detailed_header_info’: read_celfile_generic.c:1270:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1270 | strncpy(header_info->AlgorithmParameters,"Percentile:",11); | ^ read_celfile_generic.c:1292:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1292 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11); | ^ read_celfile_generic.c:1313:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 1313 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12); | ^ read_celfile_generic.c:1334:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1334 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11); | ^ read_celfile_generic.c:1355:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1355 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11); | ^ read_celfile_generic.c:1376:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation] 1376 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14); | ^ read_celfile_generic.c:1397:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation] 1397 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17); | ^ read_celfile_generic.c:1418:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 1418 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18); | ^ read_celfile_generic.c:1439:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation] 1439 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26); | ^ read_celfile_generic.c:1462:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 1462 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18); | ^ read_celfile_generic.c:1486:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 1486 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20); | ^ read_celfile_generic.c:1508:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 1508 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20); | ^ read_celfile_generic.c:1530:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 1530 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12); | ^ read_celfile_generic.c:1551:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation] 1551 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16); | ^ read_celfile_generic.c:1573:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1573 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11); | ^ read_celfile_generic.c:1595:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation] 1595 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8); | ^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_clf.c -o read_clf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_generic.c -o read_generic.o read_generic.c: In function ‘print_decode_nvt_triplet’: read_generic.c:1293:37: warning: format ‘%f’ expects argument of type ‘double’, but argument 2 has type ‘int’ [-Wformat=] 1293 | Rprintf("Its a float value is %f\n",temp32); | ~^ ~~~~~~ | | | | | int | double | %d gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_pgf.c -o read_pgf.o read_pgf.c:363:12: warning: ‘token_ends_with’ defined but not used [-Wunused-function] 363 | static int token_ends_with(char *token, char *ends_in){ | ^~~~~~~~~~~~~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp06T0b7/R.INSTALL1430711baaaeac/affyio/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-affyio/00new/affyio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affyio) begin installing package ‘affy’ begin installing package ‘oligoClasses’ * installing *source* package ‘aroma.apd’ ... ** this is package ‘aroma.apd’ version ‘0.7.1’ ** package ‘aroma.apd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning in .requireBiocPackage("affxparser", neededBy = pkgname) : Package 'affxparser' could not be loaded. Without it aroma.apd will not work. Please install it from Bioconductor, cf. https://www.bioconductor.org/ ** testing if installed package can be loaded from final location Warning in .requireBiocPackage("affxparser", neededBy = pkgname) : Package 'affxparser' could not be loaded. Without it aroma.apd will not work. Please install it from Bioconductor, cf. https://www.bioconductor.org/ ** testing if installed package keeps a record of temporary installation path * DONE (aroma.apd) * installing *source* package ‘R.filesets’ ... ** this is package ‘R.filesets’ version ‘2.15.1’ ** package ‘R.filesets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.filesets) * installing *source* package ‘BondValuation’ ... ** this is package ‘BondValuation’ version ‘0.1.1’ ** package ‘BondValuation’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTWh79a/R.INSTALL1430ade79f0ef/BondValuation/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BondValuation_init.c -o BondValuation_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MyRcppFunctions.cpp -o MyRcppFunctions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BondValuation.so BondValuation_init.o MyRcppFunctions.o RcppExports.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTWh79a/R.INSTALL1430ade79f0ef/BondValuation/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BondValuation/00new/BondValuation/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BondValuation) * installing *source* package ‘lowpassFilter’ ... ** this is package ‘lowpassFilter’ version ‘1.0-2’ ** package ‘lowpassFilter’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO6k2n9/R.INSTALL1430ab39e61352/lowpassFilter/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Convolve.cpp -o Convolve.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Deconvolution.cpp -o Deconvolution.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Filter.cpp -o Filter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c FilterBessel.cpp -o FilterBessel.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c choleskyDecomposition.cpp -o choleskyDecomposition.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lowpassFilter.so Convolve.o Deconvolution.o Filter.o FilterBessel.o RcppExports.o choleskyDecomposition.o init.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO6k2n9/R.INSTALL1430ab39e61352/lowpassFilter/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lowpassFilter/00new/lowpassFilter/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lowpassFilter) * installing *source* package ‘PortfolioAnalytics’ ... ** this is package ‘PortfolioAnalytics’ version ‘2.1.0’ ** package ‘PortfolioAnalytics’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpc3lRZD/R.INSTALL1434e41bfe9083/PortfolioAnalytics/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PortfolioAnalytics_init.c -o PortfolioAnalytics_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c residualcokurtosisMF.c -o residualcokurtosisMF.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c residualcokurtosisSF.c -o residualcokurtosisSF.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PortfolioAnalytics.so PortfolioAnalytics_init.o residualcokurtosisMF.o residualcokurtosisSF.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpc3lRZD/R.INSTALL1434e41bfe9083/PortfolioAnalytics/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PortfolioAnalytics/00new/PortfolioAnalytics/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PortfolioAnalytics) * installing *source* package ‘purrrlyr’ ... ** this is package ‘purrrlyr’ version ‘0.0.8’ ** package ‘purrrlyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmBP3fL/R.INSTALL1430a21d99b84a/purrrlyr/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fast-copy.cpp -o fast-copy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c map.c -o map.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rows-data.cpp -o rows-data.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rows-formatter.cpp -o rows-formatter.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rows.cpp -o rows.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vector.c -o vector.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o purrrlyr.so fast-copy.o init.o map.o rows-data.o rows-formatter.o rows.o utils.o vector.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmBP3fL/R.INSTALL1430a21d99b84a/purrrlyr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-purrrlyr/00new/purrrlyr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (purrrlyr) * installing *source* package ‘affy’ ... ** this is package ‘affy’ version ‘1.86.0’ ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... gcc-14 -std=gnu23 -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCRC2j7/R.INSTALL143b8e57bf467b/affy/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chipbackground.c -o chipbackground.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getall_locations.c -o getall_locations.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mas5calls.c -o mas5calls.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma2.c -o rma2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma_common.c -o rma_common.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCRC2j7/R.INSTALL143b8e57bf467b/affy/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-affy/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy) begin installing package ‘gcrma’ * installing *source* package ‘aws’ ... ** this is package ‘aws’ version ‘2.5-6’ ** package ‘aws’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuQ8fR8/R.INSTALL1434255af70e27/aws/src' gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ICIsmooth.f -o ICIsmooth.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rentries.c -o Rentries.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c awslp.f -o awslp.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c awswghts.f -o awswghts.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c caws.f -o caws.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cawsmask.f -o cawsmask.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c esiglike.f -o esiglike.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c estimateComplexSigma.f -o estimateComplexSigma.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.f -o misc.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nlmeans.f -o nlmeans.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pcaws.f -o pcaws.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c segment.f -o segment.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth3d.f -o smooth3d.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smse3.f -o smse3.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c varest.f -o varest.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o aws.so ICIsmooth.o Rentries.o awslp.o awswghts.o caws.o cawsmask.o esiglike.o estimateComplexSigma.o init.o misc.o nlmeans.o pcaws.o segment.o smooth3d.o smse3.o varest.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuQ8fR8/R.INSTALL1434255af70e27/aws/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-aws/00new/aws/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aws) begin installing package ‘GLAD’ * installing *source* package ‘PTXQC’ ... ** this is package ‘PTXQC’ version ‘1.1.2’ ** package ‘PTXQC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PTXQC) * installing *source* package ‘PSCBS’ ... ** this is package ‘PSCBS’ version ‘0.68.0’ ** package ‘PSCBS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PSCBS) begin installing package ‘aroma.core’ * installing *source* package ‘gcrma’ ... ** this is package ‘gcrma’ version ‘2.80.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4uTgiM/R.INSTALL143ec55aa7641a/gcrma/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c baseProfile.c -o baseProfile.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c computeAffinities.c -o computeAffinities.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c postmean.c -o postmean.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gcrma.so baseProfile.o computeAffinities.o postmean.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4uTgiM/R.INSTALL143ec55aa7641a/gcrma/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gcrma/00new/gcrma/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gcrma) begin installing package ‘affyPLM’ * installing *source* package ‘GLAD’ ... ** this is package ‘GLAD’ version ‘2.72.0’ ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... yes GSL has been found on the operating system operating system: Linux configure: creating ./config.status config.status: creating src/Makevars src/Makevars file PKG_LIBS = -lgsl -lgslcblas -lm PKG_CPPFLAGS = -I/usr/local/include ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpT4kKiF/R.INSTALL143ed541a8dcb/GLAD/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BkpInfo.cpp -o BkpInfo.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HaarSeg.cpp -o HaarSeg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MoveBkp.cpp -o MoveBkp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OutliersGNL.cpp -o OutliersGNL.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chrBreakpoints.cpp -o chrBreakpoints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cutree.cpp -o cutree.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c daglad.cpp -o daglad.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c filterBkp.cpp -o filterBkp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c findCluster.cpp -o findCluster.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glad-utils.cpp -o glad-utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hclust.cpp -o hclust.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laws.c -o laws.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loopRemove.cpp -o loopRemove.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -lgsl -lgslcblas -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpT4kKiF/R.INSTALL143ed541a8dcb/GLAD/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GLAD/00new/GLAD/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GLAD) * installing *source* package ‘oligoClasses’ ... ** this is package ‘oligoClasses’ version ‘1.70.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oligoClasses) * installing *source* package ‘aroma.core’ ... ** this is package ‘aroma.core’ version ‘3.3.1’ ** package ‘aroma.core’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function write to write.default, which was defined in environment aroma.core. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aroma.core) * installing *source* package ‘affyPLM’ ... ** this is package ‘affyPLM’ version ‘1.84.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprbB9i9/R.INSTALL1441e2261ead9/affyPLM/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LESN.c -o LESN.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_avg_log.c -o PLM_avg_log.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_biweight.c -o PLM_biweight.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_log_avg.c -o PLM_log_avg.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_medianPM.c -o PLM_medianPM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_median_logPM.c -o PLM_median_logPM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_medianpolish.c -o PLM_medianpolish.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PLM_modelmatrix.c -o PLM_modelmatrix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SCAB.c -o SCAB.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chipbackground.c -o chipbackground.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common_types.c -o common_types.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c do_PLMrlm.c -o do_PLMrlm.o do_PLMrlm.c: In function ‘do_PLM_rlm’: do_PLMrlm.c:620:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 620 | int first_ind; | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c do_PLMrma.c -o do_PLMrma.o do_PLMrma.c: In function ‘do_PLMrma’: do_PLMrma.c:209:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 209 | int first_ind; | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c do_PLMthreestep.c -o do_PLMthreestep.o do_PLMthreestep.c: In function ‘do_PLMthreestep’: do_PLMthreestep.c:118:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 118 | int first_ind; | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c idealmismatch.c -o idealmismatch.o idealmismatch.c: In function ‘IdealMM_correct_single’: idealmismatch.c:71:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 71 | int first_ind; | ^~~~~~~~~ idealmismatch.c: In function ‘SpecificBiweightCorrect_single’: idealmismatch.c:183:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 183 | int first_ind; | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_threestep.c -o lm_threestep.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix_functions.c -o matrix_functions.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nthLargestPM.c -o nthLargestPM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c preprocess.c -o preprocess.o preprocess.c: In function ‘pp_background’: preprocess.c:158:7: warning: variable ‘which_lesn’ set but not used [-Wunused-but-set-variable] 158 | int which_lesn; | ^~~~~~~~~~ preprocess.c: In function ‘pp_bothstages’: preprocess.c:677:12: warning: variable ‘cols’ set but not used [-Wunused-but-set-variable] 677 | int rows,cols; | ^~~~ preprocess.c:677:7: warning: variable ‘rows’ set but not used [-Wunused-but-set-variable] 677 | int rows,cols; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psi_fns.c -o psi_fns.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qnorm_probeset.c -o qnorm_probeset.o qnorm_probeset.c: In function ‘qnorm_probeset_c’: qnorm_probeset.c:110:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 110 | int first_ind; | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_rmaexpress.c -o read_rmaexpress.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rlm_PLM.c -o rlm_PLM.o rlm_PLM.c: In function ‘R_rlm_PLMset_c’: rlm_PLM.c:1481:12: warning: variable ‘cols’ set but not used [-Wunused-but-set-variable] 1481 | int rows,cols; | ^~~~ rlm_PLM.c:1481:7: warning: variable ‘rows’ set but not used [-Wunused-but-set-variable] 1481 | int rows,cols; | ^~~~ rlm_PLM.c: In function ‘rlm_PLMset_nameoutput’: rlm_PLM.c:870:32: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 9 [-Wformat-truncation=] 870 | snprintf(tmp_str2,9,"%d",j+1); | ^~ rlm_PLM.c:870:31: note: directive argument in the range [1, 2147483647] 870 | snprintf(tmp_str2,9,"%d",j+1); | ^~~~ In file included from /usr/include/stdio.h:970, from /home/hornik/tmp/R/include/R.h:44, from preprocess.h:4, from rlm_PLM.c:71: In function ‘snprintf’, inlined from ‘rlm_PLMset_nameoutput’ at rlm_PLM.c:870:4: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:10: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 9 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ rlm_PLM.c: In function ‘rlm_PLMset_nameoutput’: rlm_PLM.c:868:32: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 9 [-Wformat-truncation=] 868 | snprintf(tmp_str2,9,"%d",j+2); | ^~ rlm_PLM.c:868:31: note: directive argument in the range [2, 2147483647] 868 | snprintf(tmp_str2,9,"%d",j+2); | ^~~~ In function ‘snprintf’, inlined from ‘rlm_PLMset_nameoutput’ at rlm_PLM.c:868:4: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:10: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 9 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rlm_threestep.c -o rlm_threestep.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma_PLM.c -o rma_PLM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma_common.c -o rma_common.o rma_common.c: In function ‘median’: rma_common.c:60:7: warning: unused variable ‘i’ [-Wunused-variable] 60 | int i; | ^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scaling.c -o scaling.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c threestep.c -o threestep.o threestep.c: In function ‘threestep_summary’: threestep.c:82:15: warning: variable ‘MM’ set but not used [-Wunused-but-set-variable] 82 | double *PM,*MM; | ^~ threestep.c: In function ‘R_threestep_c’: threestep.c:193:12: warning: variable ‘cols’ set but not used [-Wunused-but-set-variable] 193 | int rows,cols; | ^~~~ threestep.c:193:7: warning: variable ‘rows’ set but not used [-Wunused-but-set-variable] 193 | int rows,cols; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c threestep_PLM.c -o threestep_PLM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c threestep_common.c -o threestep_common.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c threestep_summary.c -o threestep_summary.o threestep_summary.c: In function ‘do_3summary’: threestep_summary.c:73:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 73 | int first_ind; | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c threestep_summary_methods.c -o threestep_summary_methods.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transfns.c -o transfns.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o affyPLM.so LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprbB9i9/R.INSTALL1441e2261ead9/affyPLM/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-affyPLM/00new/affyPLM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affyPLM) * installing *source* package ‘affxparser’ ... ** this is package ‘affxparser’ version ‘1.80.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3C1IK9/R.INSTALL14309163b5cc6f/affxparser/src' rm -f fusion/calvin_files/data/src/CDFData.o fusion/calvin_files/data/src/CDFProbeGroupInformation.o fusion/calvin_files/data/src/CDFProbeInformation.o fusion/calvin_files/data/src/CDFProbeSetInformation.o fusion/calvin_files/data/src/CDFQCProbeInformation.o fusion/calvin_files/data/src/CDFQCProbeSetInformation.o fusion/calvin_files/data/src/CELData.o fusion/calvin_files/data/src/CHPBackgroundZone.o fusion/calvin_files/data/src/CHPData.o fusion/calvin_files/data/src/CHPExpressionEntry.o fusion/calvin_files/data/src/CHPMultiDataData.o fusion/calvin_files/data/src/CHPTilingData.o fusion/calvin_files/data/src/CHPQuantificationData.o fusion/calvin_files/data/src/CHPQuantificationDetectionData.o fusion/calvin_files/data/src/CHPGenotypeEntry.o fusion/calvin_files/data/src/CHPUniversalEntry.o fusion/calvin_files/data/src/ColumnInfo.o fusion/calvin_files/data/src/DataGroup.o fusion/calvin_files/data/src/DataGroupHeader.o fusion/calvin_files/data/src/DataSet.o fusion/calvin_files/data/src/DataSetHeader.o fusion/calvin_files/data/src/FileHeader.o fusion/calvin_files/data/src/GenericData.o fusion/calvin_files/data/src/GenericDataHeader.o fusion/calvin_files/exception/src/ExceptionBase.o fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion/calvin_files/fusion/src/FusionBPMAPData.o fusion/calvin_files/fusion/src/FusionCDFData.o fusion/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion/calvin_files/fusion/src/FusionCELData.o fusion/calvin_files/fusion/src/FusionCHPData.o fusion/calvin_files/fusion/src/FusionProbeSetResults.o fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion/calvin_files/fusion/src/FusionCHPLegacyData.o fusion/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion/calvin_files/fusion/src/FusionCHPTilingData.o fusion/calvin_files/fusion/src/FusionCHPGenericData.o fusion/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion/calvin_files/parameter/src/ParameterNameValueType.o fusion/calvin_files/parsers/src/CDFFileReader.o fusion/calvin_files/parsers/src/CelFileReader.o fusion/calvin_files/parsers/src/CHPFileReader.o fusion/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion/calvin_files/parsers/src/CHPTilingFileReader.o fusion/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion/calvin_files/parsers/src/DataGroupHeaderReader.o fusion/calvin_files/parsers/src/DataGroupReader.o fusion/calvin_files/parsers/src/DataSetHeaderReader.o fusion/calvin_files/parsers/src/DataSetReader.o fusion/calvin_files/parsers/src/FileHeaderReader.o fusion/calvin_files/parsers/src/FileInput.o fusion/calvin_files/parsers/src/GenericDataHeaderReader.o fusion/calvin_files/parsers/src/GenericFileReader.o fusion/calvin_files/utils/src/AffymetrixGuid.o fusion/calvin_files/utils/src/DateTime.o fusion/calvin_files/utils/src/FileUtils.o fusion/calvin_files/utils/src/StringUtils.o fusion/calvin_files/utils/src/checksum.o fusion/file/BPMAPFileData.o fusion/file/BPMAPFileWriter.o fusion/file/CDFFileData.o fusion/file/CELFileData.o fusion/file/CHPFileData.o fusion/file/FileIO.o fusion/file/FileWriter.o fusion/file/TsvFile/ClfFile.o fusion/file/TsvFile/PgfFile.o fusion/file/TsvFile/TsvFile.o fusion/util/AffxByteArray.o fusion/util/AffxConv.o fusion/util/MsgStream.o fusion/util/Util.o fusion/util/Err.o fusion/util/Fs.o fusion/util/Verbose.o fusion/util/RowFile.o fusion/util/TableFile.o fusion/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o 000.init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CDFData.cpp -o fusion/calvin_files/data/src/CDFData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion/calvin_files/data/src/CDFProbeGroupInformation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CDFProbeInformation.cpp -o fusion/calvin_files/data/src/CDFProbeInformation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion/calvin_files/data/src/CDFProbeSetInformation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion/calvin_files/data/src/CDFQCProbeInformation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion/calvin_files/data/src/CDFQCProbeSetInformation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CELData.cpp -o fusion/calvin_files/data/src/CELData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion/calvin_files/data/src/CHPBackgroundZone.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPData.cpp -o fusion/calvin_files/data/src/CHPData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion/calvin_files/data/src/CHPExpressionEntry.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPMultiDataData.cpp -o fusion/calvin_files/data/src/CHPMultiDataData.o fusion/calvin_files/data/src/CHPMultiDataData.cpp: In member function ‘void affymetrix_calvin_io::CHPMultiDataData::SetEntryCount(affymetrix_calvin_io::MultiDataType, int32_t, int32_t, const std::vector&, const std::wstring&)’: fusion/calvin_files/data/src/CHPMultiDataData.cpp:427:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 427 | else | ^~~~ fusion/calvin_files/data/src/CHPMultiDataData.cpp:429:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 429 | DataGroupHeader* dgHdr = GetDataGroupHeader(dataTypeGroupNames[dataType]); | ^~~~~~~~~~~~~~~ fusion/calvin_files/data/src/CHPMultiDataData.cpp: In member function ‘void affymetrix_calvin_io::CHPMultiDataData::SetEntryCount(affymetrix_calvin_io::MultiDataType, int32_t, int, int, int, const std::wstring&)’: fusion/calvin_files/data/src/CHPMultiDataData.cpp:457:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 457 | else | ^~~~ fusion/calvin_files/data/src/CHPMultiDataData.cpp:459:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 459 | DataGroupHeader* dgHdr = GetDataGroupHeader(dataTypeGroupNames[dataType]); | ^~~~~~~~~~~~~~~ fusion/calvin_files/data/src/CHPMultiDataData.cpp: In member function ‘void affymetrix_calvin_io::CHPMultiDataData::SetEntryCount(affymetrix_calvin_io::MultiDataType, int32_t, int, int, int, int, const std::wstring&)’: fusion/calvin_files/data/src/CHPMultiDataData.cpp:482:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 482 | else | ^~~~ fusion/calvin_files/data/src/CHPMultiDataData.cpp:484:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 484 | DataGroupHeader* dgHdr = GetDataGroupHeader(dataTypeGroupNames[dataType]); | ^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPTilingData.cpp -o fusion/calvin_files/data/src/CHPTilingData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPQuantificationData.cpp -o fusion/calvin_files/data/src/CHPQuantificationData.o fusion/calvin_files/data/src/CHPQuantificationData.cpp: In member function ‘void affymetrix_calvin_io::CHPQuantificationData::AddColumns(affymetrix_calvin_io::DataSetHeader&, bool)’: fusion/calvin_files/data/src/CHPQuantificationData.cpp:144:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 144 | else | ^~~~ fusion/calvin_files/data/src/CHPQuantificationData.cpp:146:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 146 | hdr.AddFloatColumn(QUANTIFICATION_QUANTIFICATION_NAME); | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion/calvin_files/data/src/CHPQuantificationDetectionData.o fusion/calvin_files/data/src/CHPQuantificationDetectionData.cpp: In member function ‘void affymetrix_calvin_io::CHPQuantificationDetectionData::AddColumns(affymetrix_calvin_io::DataSetHeader&, bool)’: fusion/calvin_files/data/src/CHPQuantificationDetectionData.cpp:151:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 151 | else | ^~~~ fusion/calvin_files/data/src/CHPQuantificationDetectionData.cpp:153:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 153 | hdr.AddFloatColumn(QUANTIFICATION_DETECTION_QUANTIFICATION_NAME); | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion/calvin_files/data/src/CHPGenotypeEntry.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion/calvin_files/data/src/CHPUniversalEntry.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/ColumnInfo.cpp -o fusion/calvin_files/data/src/ColumnInfo.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/DataGroup.cpp -o fusion/calvin_files/data/src/DataGroup.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/DataGroupHeader.cpp -o fusion/calvin_files/data/src/DataGroupHeader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/DataSet.cpp -o fusion/calvin_files/data/src/DataSet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/DataSetHeader.cpp -o fusion/calvin_files/data/src/DataSetHeader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/FileHeader.cpp -o fusion/calvin_files/data/src/FileHeader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/GenericData.cpp -o fusion/calvin_files/data/src/GenericData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/data/src/GenericDataHeader.cpp -o fusion/calvin_files/data/src/GenericDataHeader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/exception/src/ExceptionBase.cpp -o fusion/calvin_files/exception/src/ExceptionBase.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion/calvin_files/fusion/src/FusionBPMAPData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCDFData.cpp -o fusion/calvin_files/fusion/src/FusionCDFData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCELData.cpp -o fusion/calvin_files/fusion/src/FusionCELData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPData.cpp -o fusion/calvin_files/fusion/src/FusionCHPData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion/calvin_files/fusion/src/FusionProbeSetResults.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion/calvin_files/fusion/src/FusionCHPLegacyData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion/calvin_files/fusion/src/FusionCHPMultiDataData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion/calvin_files/fusion/src/FusionCHPTilingData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion/calvin_files/fusion/src/FusionCHPGenericData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion/calvin_files/fusion/src/FusionCHPQuantificationData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion/calvin_files/parameter/src/ParameterNameValueType.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CDFFileReader.cpp -o fusion/calvin_files/parsers/src/CDFFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CelFileReader.cpp -o fusion/calvin_files/parsers/src/CelFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CHPFileReader.cpp -o fusion/calvin_files/parsers/src/CHPFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion/calvin_files/parsers/src/CHPMultiDataFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion/calvin_files/parsers/src/CHPTilingFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion/calvin_files/parsers/src/CHPQuantificationFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion/calvin_files/parsers/src/DataGroupHeaderReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/DataGroupReader.cpp -o fusion/calvin_files/parsers/src/DataGroupReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion/calvin_files/parsers/src/DataSetHeaderReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/DataSetReader.cpp -o fusion/calvin_files/parsers/src/DataSetReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion/calvin_files/parsers/src/FileHeaderReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/FileInput.cpp -o fusion/calvin_files/parsers/src/FileInput.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion/calvin_files/parsers/src/GenericDataHeaderReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/parsers/src/GenericFileReader.cpp -o fusion/calvin_files/parsers/src/GenericFileReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion/calvin_files/utils/src/AffymetrixGuid.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/utils/src/DateTime.cpp -o fusion/calvin_files/utils/src/DateTime.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/utils/src/FileUtils.cpp -o fusion/calvin_files/utils/src/FileUtils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/utils/src/StringUtils.cpp -o fusion/calvin_files/utils/src/StringUtils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/calvin_files/utils/src/checksum.cpp -o fusion/calvin_files/utils/src/checksum.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/BPMAPFileData.cpp -o fusion/file/BPMAPFileData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/BPMAPFileWriter.cpp -o fusion/file/BPMAPFileWriter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/CDFFileData.cpp -o fusion/file/CDFFileData.o fusion/file/CDFFileData.cpp: In member function ‘bool affxcdf::CCDFFileData::ReadTextFormat()’: fusion/file/CDFFileData.cpp:858:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 858 | else if ( strncmp( subStr, CDFVERSION6, strlen(CDFVERSION6)) == 0) | ^~ fusion/file/CDFFileData.cpp:861:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 861 | if (m_Header.m_Version >= 6) | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/CELFileData.cpp -o fusion/file/CELFileData.o fusion/file/CELFileData.cpp: In member function ‘float affxcel::CCELFileData::GetIntensity(int)’: fusion/file/CELFileData.cpp:2409:41: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2409 | fIntensity=MmGetFloat_I(&m_pEntries[index].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2414:41: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2414 | fIntensity=MmGetFloat_I(&(m_pEntries[index].Intensity)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2419:42: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2419 | fIntensity=MmGetUInt16_N(&(m_pTransciptomeEntries[index].Intensity)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp: In member function ‘int affxcel::CCELFileData::GetIntensities(int, std::vector&)’: fusion/file/CELFileData.cpp:2445:37: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2445 | intensities[idx]=MmGetFloat_I(&m_pEntries[idx].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2451:37: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2451 | intensities[idx]=MmGetFloat_I(&m_pEntries[idx].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2457:38: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2457 | intensities[idx]=MmGetUInt16_N(&m_pTransciptomeEntries[idx].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp: In member function ‘float affxcel::CCELFileData::GetStdv(int)’: fusion/file/CELFileData.cpp:2506:37: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2506 | fStdev=MmGetFloat_I(&m_pEntries[index].Stdv); | ^~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2509:37: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2509 | fStdev=MmGetFloat_I(&(m_pEntries[index].Stdv)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2512:38: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2512 | fStdev=MmGetUInt16_N(&(m_pTransciptomeEntries[index].Stdv)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp: In member function ‘short int affxcel::CCELFileData::GetPixels(int)’: fusion/file/CELFileData.cpp:2551:38: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2551 | sPixels=MmGetInt16_I(&m_pEntries[index].Pixels); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:2554:38: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2554 | sPixels=MmGetInt16_I(&m_pEntries[index].Pixels); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp: In member function ‘void affxcel::CCELFileData::SetIntensity(int, float)’: fusion/file/CELFileData.cpp:3194:30: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3194 | MmSetFloat_I(&m_pEntries[index].Intensity,intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:3199:30: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3199 | MmSetFloat_I(&m_pEntries[index].Intensity,intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:3204:31: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3204 | MmSetUInt16_N(&m_pTransciptomeEntries[index].Intensity,s); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp: In member function ‘void affxcel::CCELFileData::SetStdv(int, float)’: fusion/file/CELFileData.cpp:3251:31: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3251 | MmSetUInt16_N(&m_pTransciptomeEntries[index].Stdv,s); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp:3255:30: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3255 | MmSetFloat_I(&m_pEntries[index].Stdv,stdev); | ^~~~~~~~~~~~~~~~~~~~~~~ fusion/file/CELFileData.cpp: In member function ‘void affxcel::CCELFileData::SetPixels(int, short int)’: fusion/file/CELFileData.cpp:3294:42: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3294 | MmSetUInt16_I((uint16_t*)&m_pEntries[index].Pixels,(uint16_t)pixels); | ^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/CHPFileData.cpp -o fusion/file/CHPFileData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/FileIO.cpp -o fusion/file/FileIO.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/FileWriter.cpp -o fusion/file/FileWriter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/TsvFile/ClfFile.cpp -o fusion/file/TsvFile/ClfFile.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/TsvFile/PgfFile.cpp -o fusion/file/TsvFile/PgfFile.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/file/TsvFile/TsvFile.cpp -o fusion/file/TsvFile/TsvFile.o fusion/file/TsvFile/TsvFile.cpp: In member function ‘void affx::TsvFile::dump_bindings()’: fusion/file/TsvFile/TsvFile.cpp:3918:20: warning: format ‘%p’ expects argument of type ‘void*’, but argument 3 has type ‘affx::TsvFileBinding*’ [-Wformat=] 3918 | printf("%3d : %p : bound to clvl=%2d cidx=%2d cname='%s')\n", | ~^ | | | void* 3919 | vi,var, | ~~~ | | | affx::TsvFileBinding* fusion/file/TsvFile/TsvFile.cpp: In static member function ‘static int affx::TsvFile::getLineCountInFile(const std::string&, bool)’: fusion/file/TsvFile/TsvFile.cpp:4921:20: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 4921 | catch (exception e) { | ^ fusion/file/TsvFile/TsvFile.cpp: In static member function ‘static int affx::TsvFile::replaceCharInFile(const std::string&, char, char, bool)’: fusion/file/TsvFile/TsvFile.cpp:4970:20: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 4970 | catch (exception e) { | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/AffxByteArray.cpp -o fusion/util/AffxByteArray.o fusion/util/AffxByteArray.cpp: In member function ‘const AffxByteArray& AffxByteArray::operator=(const AffxByteArray&)’: fusion/util/AffxByteArray.cpp:320:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 320 | if (this == &ba) | ^~ fusion/util/AffxByteArray.cpp:323:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 323 | empty(); | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/AffxConv.cpp -o fusion/util/AffxConv.o fusion/util/AffxConv.cpp: In function ‘std::string getInt(int, bool)’: fusion/util/AffxConv.cpp:124:15: warning: self-comparison always evaluates to false [-Wtautological-compare] 124 | if (i != i) {return "nan";} | ~ ^~ ~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/MsgStream.cpp -o fusion/util/MsgStream.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/Util.cpp -o fusion/util/Util.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/Err.cpp -o fusion/util/Err.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/Fs.cpp -o fusion/util/Fs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/Verbose.cpp -o fusion/util/Verbose.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/RowFile.cpp -o fusion/util/RowFile.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/TableFile.cpp -o fusion/util/TableFile.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c fusion/util/Convert.cpp -o fusion/util/Convert.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-sign-compare -O0 -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c 000.init.c -o 000.init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o affxparser.so fusion/calvin_files/data/src/CDFData.o fusion/calvin_files/data/src/CDFProbeGroupInformation.o fusion/calvin_files/data/src/CDFProbeInformation.o fusion/calvin_files/data/src/CDFProbeSetInformation.o fusion/calvin_files/data/src/CDFQCProbeInformation.o fusion/calvin_files/data/src/CDFQCProbeSetInformation.o fusion/calvin_files/data/src/CELData.o fusion/calvin_files/data/src/CHPBackgroundZone.o fusion/calvin_files/data/src/CHPData.o fusion/calvin_files/data/src/CHPExpressionEntry.o fusion/calvin_files/data/src/CHPMultiDataData.o fusion/calvin_files/data/src/CHPTilingData.o fusion/calvin_files/data/src/CHPQuantificationData.o fusion/calvin_files/data/src/CHPQuantificationDetectionData.o fusion/calvin_files/data/src/CHPGenotypeEntry.o fusion/calvin_files/data/src/CHPUniversalEntry.o fusion/calvin_files/data/src/ColumnInfo.o fusion/calvin_files/data/src/DataGroup.o fusion/calvin_files/data/src/DataGroupHeader.o fusion/calvin_files/data/src/DataSet.o fusion/calvin_files/data/src/DataSetHeader.o fusion/calvin_files/data/src/FileHeader.o fusion/calvin_files/data/src/GenericData.o fusion/calvin_files/data/src/GenericDataHeader.o fusion/calvin_files/exception/src/ExceptionBase.o fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion/calvin_files/fusion/src/FusionBPMAPData.o fusion/calvin_files/fusion/src/FusionCDFData.o fusion/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion/calvin_files/fusion/src/FusionCELData.o fusion/calvin_files/fusion/src/FusionCHPData.o fusion/calvin_files/fusion/src/FusionProbeSetResults.o fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion/calvin_files/fusion/src/FusionCHPLegacyData.o fusion/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion/calvin_files/fusion/src/FusionCHPTilingData.o fusion/calvin_files/fusion/src/FusionCHPGenericData.o fusion/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion/calvin_files/parameter/src/ParameterNameValueType.o fusion/calvin_files/parsers/src/CDFFileReader.o fusion/calvin_files/parsers/src/CelFileReader.o fusion/calvin_files/parsers/src/CHPFileReader.o fusion/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion/calvin_files/parsers/src/CHPTilingFileReader.o fusion/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion/calvin_files/parsers/src/DataGroupHeaderReader.o fusion/calvin_files/parsers/src/DataGroupReader.o fusion/calvin_files/parsers/src/DataSetHeaderReader.o fusion/calvin_files/parsers/src/DataSetReader.o fusion/calvin_files/parsers/src/FileHeaderReader.o fusion/calvin_files/parsers/src/FileInput.o fusion/calvin_files/parsers/src/GenericDataHeaderReader.o fusion/calvin_files/parsers/src/GenericFileReader.o fusion/calvin_files/utils/src/AffymetrixGuid.o fusion/calvin_files/utils/src/DateTime.o fusion/calvin_files/utils/src/FileUtils.o fusion/calvin_files/utils/src/StringUtils.o fusion/calvin_files/utils/src/checksum.o fusion/file/BPMAPFileData.o fusion/file/BPMAPFileWriter.o fusion/file/CDFFileData.o fusion/file/CELFileData.o fusion/file/CHPFileData.o fusion/file/FileIO.o fusion/file/FileWriter.o fusion/file/TsvFile/ClfFile.o fusion/file/TsvFile/PgfFile.o fusion/file/TsvFile/TsvFile.o fusion/util/AffxByteArray.o fusion/util/AffxConv.o fusion/util/MsgStream.o fusion/util/Util.o fusion/util/Err.o fusion/util/Fs.o fusion/util/Verbose.o fusion/util/RowFile.o fusion/util/TableFile.o fusion/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o 000.init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3C1IK9/R.INSTALL14309163b5cc6f/affxparser/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-affxparser/00new/affxparser/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affxparser) begin installing package ‘oligo’ * installing *source* package ‘oligo’ ... ** this is package ‘oligo’ version ‘1.72.0’ ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... gcc-14 -std=gnu23 -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfNtFXK/R.INSTALL1444cb4347f3b6/oligo/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DABG.c -o DABG.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ParserGzXYS.c -o ParserGzXYS.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ParserXYS.c -o ParserXYS.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c baseProfile.c -o baseProfile.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c basecontent.c -o basecontent.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chipbackground.c -o chipbackground.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mas5calls.c -o mas5calls.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma2.c -o rma2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma_common.c -o rma_common.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trimmed.c -o trimmed.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o oligo.so DABG.o ParserGzXYS.o ParserXYS.o baseProfile.o basecontent.o chipbackground.o mas5calls.o rma2.o rma_common.o trimmed.o -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfNtFXK/R.INSTALL1444cb4347f3b6/oligo/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-oligo/00new/oligo/libs ** R ** inst ** byte-compile and prepare package for lazy loading Note: in method for ‘pm<-’ with signature ‘object="TilingFeatureSet",subset="ANY",target="ANY",value="array"’: expanding the signature to include omitted arguments in definition: subset = "missing", target = "missing" Note: in method for ‘mm<-’ with signature ‘object="TilingFeatureSet",subset="ANY",target="ANY",value="array"’: expanding the signature to include omitted arguments in definition: subset = "missing", target = "missing" ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oligo) begin installing package ‘pdInfoBuilder’ * installing *source* package ‘pdInfoBuilder’ ... ** this is package ‘pdInfoBuilder’ version ‘1.72.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpChziC0/R.INSTALL1446db4b183141/pdInfoBuilder/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdInfoBuilder.c -o pdInfoBuilder.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pdInfoBuilder.so pdInfoBuilder.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpChziC0/R.INSTALL1446db4b183141/pdInfoBuilder/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pdInfoBuilder/00new/pdInfoBuilder/libs ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’ ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location No methods found in package ‘RSQLite’ for request: ‘dbGetQuery’ when loading ‘pdInfoBuilder’ ** testing if installed package keeps a record of temporary installation path * DONE (pdInfoBuilder) * installing *source* package ‘rlibkriging’ ... ** this is package ‘rlibkriging’ version ‘0.9-1’ ** package ‘rlibkriging’ successfully unpacked and MD5 sums checked ** using staged installation set CMAKE_BIN=/usr/bin/cmake set CC=gcc-14 -std=gnu23 set FC=gfortran-14 set CFLAGS=-I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native set CXX=g++-14 set CXXFLAGS=-std=gnu++17 -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native set LDFLAGS=-Wl,-O1 travis-ci -- Color mode enabled fatal: not a git repository (or any parent up to mount point /) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-14 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-14 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at armadillo/CMakeLists.txt:43 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- *** set cmake policy CMP0025 to NEW -- CMAKE_CXX_STANDARD = 14 -- Configuring Armadillo 14.2.2 -- -- *** WARNING: variable 'CMAKE_CXX_FLAGS' is not empty; this may cause problems! -- -- -- CMAKE_SYSTEM_NAME = Linux -- CMAKE_CXX_COMPILER_ID = GNU -- CMAKE_CXX_COMPILER_VERSION = 14.2.0 -- CMAKE_COMPILER_IS_GNUCXX = 1 -- -- *** options: -- HEADER_ONLY = OFF -- STATIC_LIB = on -- OPENBLAS_PROVIDES_LAPACK = OFF -- ALLOW_FLEXIBLAS_LINUX = ON -- ALLOW_OPENBLAS_MACOS = OFF -- ALLOW_BLAS_LAPACK_MACOS = OFF -- BUILD_SMOKE_TEST = OFF -- -- *** Looking for external libraries -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so -- FlexiBLAS_FOUND = NO -- MKL_FOUND = NO -- OpenBLAS_FOUND = NO -- ATLAS_FOUND = NO -- BLAS_FOUND = YES -- LAPACK_FOUND = YES -- Found ARPACK: /usr/lib/x86_64-linux-gnu/libarpack.so -- ARPACK_FOUND = YES -- Looking for SuperLU version 5 -- Found SuperLU version 7, but version 5 is required -- Could not find SuperLU -- SuperLU_FOUND = NO -- -- *** Result of configuration: -- *** ARMA_USE_WRAPPER = true -- *** ARMA_USE_LAPACK = true -- *** ARMA_USE_BLAS = true -- *** ARMA_USE_ATLAS = false -- *** ARMA_USE_ARPACK = true -- *** ARMA_USE_SUPERLU = false -- -- *** Armadillo wrapper library links with these libraries: -- *** ARMA_LIBS = /usr/lib/x86_64-linux-gnu/libblas.so;/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libarpack.so -- -- Copying /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/armadillo/include/ to /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/ -- Generating /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/config.hpp -- -- CMAKE_CXX_FLAGS = -g -O2 -Wall -pedantic -mtune=native -O2 -- CMAKE_SHARED_LINKER_FLAGS = -Wl,-O1 -Wl,--no-as-needed -- CMAKE_REQUIRED_INCLUDES = -- -- CMAKE_INSTALL_PREFIX = /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed -- CMAKE_INSTALL_LIBDIR = lib -- CMAKE_INSTALL_INCLUDEDIR = include -- CMAKE_INSTALL_DATADIR = share -- CMAKE_INSTALL_BINDIR = bin -- *** copying /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/armadillo/misc/ to /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/misc/ -- *** generating '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/misc/armadillo.pc' -- Generating '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/ArmadilloConfig.cmake' -- Generating '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/ArmadilloConfigVersion.cmake' -- Generating '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/InstallFiles/ArmadilloConfig.cmake' -- Generating '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/InstallFiles/ArmadilloConfigVersion.cmake' -- Build static library -- Static analysis not available. -- Octave binding available [v9.4.0] but disabled as requested. -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Matlab (missing: Matlab_INCLUDE_DIRS MAIN_PROGRAM) -- Matlab binding not available CMake Warning (dev) at CMakeLists.txt:475 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.3", minimum required is "3.7") -- Checking Python requirements ✔ Module numpy>=1.18,<2 is available ✔ Module pytest is available ✔ Module setuptools is available ✔ Module packaging is available ✔ Module wheel is available -- PYTHON binding available but disabled as requested. -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success CMake Warning at CMakeLists.txt:646 (message): clang-format no found; clang-format target is not available. CMake Warning at CMakeLists.txt:680 (message): doxygen no found; doc target is not available. -- Configuring done (1.3s) -- Generating done (0.0s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build' [ 3%] Building C object lbfgsb_cpp/CMakeFiles/lbfgsb_cpp.dir/Lbfgsb.3.0/blas.c.o [ 6%] Building C object lbfgsb_cpp/CMakeFiles/lbfgsb_cpp.dir/Lbfgsb.3.0/lbfgsb.c.o /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘mainlb_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:507:19: warning: unused variable ‘io___70’ [-Wunused-variable] 507 | static cilist io___70 = { 0, 6, 0, fmt_1007, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:506:19: warning: unused variable ‘io___69’ [-Wunused-variable] 506 | static cilist io___69 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:505:19: warning: unused variable ‘io___65’ [-Wunused-variable] 505 | static cilist io___65 = { 0, 6, 0, fmt_1008, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:504:19: warning: unused variable ‘io___63’ [-Wunused-variable] 504 | static cilist io___63 = { 0, 6, 0, fmt_1005, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:503:19: warning: unused variable ‘io___62’ [-Wunused-variable] 503 | static cilist io___62 = { 0, 6, 0, fmt_1006, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:502:19: warning: unused variable ‘io___60’ [-Wunused-variable] 502 | static cilist io___60 = { 0, 6, 0, fmt_1005, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:501:19: warning: unused variable ‘io___58’ [-Wunused-variable] 501 | static cilist io___58 = { 0, 6, 0, fmt_1001, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:500:19: warning: unused variable ‘io___57’ [-Wunused-variable] 500 | static cilist io___57 = { 0, 0, 0, fmt_1003, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:499:19: warning: unused variable ‘io___56’ [-Wunused-variable] 499 | static cilist io___56 = { 0, 6, 0, fmt_1002, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:389:11: warning: unused variable ‘o__1’ [-Wunused-variable] 389 | olist o__1; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘active_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1264:19: warning: unused variable ‘io___77’ [-Wunused-variable] 1264 | static cilist io___77 = { 0, 6, 0, fmt_1001, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1263:19: warning: unused variable ‘io___76’ [-Wunused-variable] 1263 | static cilist io___76 = { 0, 6, 0, 0, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1262:19: warning: unused variable ‘io___75’ [-Wunused-variable] 1262 | static cilist io___75 = { 0, 6, 0, 0, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘cauchy_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1594:19: warning: unused variable ‘io___126’ [-Wunused-variable] 1594 | static cilist io___126 = { 0, 6, 0, fmt_2010, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1593:19: warning: unused variable ‘io___125’ [-Wunused-variable] 1593 | static cilist io___125 = { 0, 6, 0, fmt_1010, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1592:19: warning: unused variable ‘io___124’ [-Wunused-variable] 1592 | static cilist io___124 = { 0, 6, 0, fmt_6010, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1591:19: warning: unused variable ‘io___123’ [-Wunused-variable] 1591 | static cilist io___123 = { 0, 6, 0, fmt_4010, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1590:19: warning: unused variable ‘io___122’ [-Wunused-variable] 1590 | static cilist io___122 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1589:19: warning: unused variable ‘io___121’ [-Wunused-variable] 1589 | static cilist io___121 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1588:19: warning: unused variable ‘io___116’ [-Wunused-variable] 1588 | static cilist io___116 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1587:19: warning: unused variable ‘io___113’ [-Wunused-variable] 1587 | static cilist io___113 = { 0, 6, 0, fmt_6010, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1586:19: warning: unused variable ‘io___112’ [-Wunused-variable] 1586 | static cilist io___112 = { 0, 6, 0, fmt_5010, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1585:19: warning: unused variable ‘io___111’ [-Wunused-variable] 1585 | static cilist io___111 = { 0, 6, 0, fmt_4011, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1584:19: warning: unused variable ‘io___104’ [-Wunused-variable] 1584 | static cilist io___104 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1583:19: warning: unused variable ‘io___99’ [-Wunused-variable] 1583 | static cilist io___99 = { 0, 6, 0, fmt_1010, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1582:19: warning: unused variable ‘io___90’ [-Wunused-variable] 1582 | static cilist io___90 = { 0, 6, 0, fmt_3010, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:1581:19: warning: unused variable ‘io___82’ [-Wunused-variable] 1581 | static cilist io___82 = { 0, 6, 0, 0, 0 }; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘freev_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:2812:19: warning: unused variable ‘io___167’ [-Wunused-variable] 2812 | static cilist io___167 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:2811:19: warning: unused variable ‘io___165’ [-Wunused-variable] 2811 | static cilist io___165 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:2810:19: warning: unused variable ‘io___164’ [-Wunused-variable] 2810 | static cilist io___164 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:2809:19: warning: unused variable ‘io___163’ [-Wunused-variable] 2809 | static cilist io___163 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘lnsrlb_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3089:19: warning: unused variable ‘io___178’ [-Wunused-variable] 3089 | static cilist io___178 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘prn1lb_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3374:19: warning: unused variable ‘io___189’ [-Wunused-variable] 3374 | static cilist io___189 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3373:19: warning: unused variable ‘io___188’ [-Wunused-variable] 3373 | static cilist io___188 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3372:19: warning: unused variable ‘io___186’ [-Wunused-variable] 3372 | static cilist io___186 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3371:19: warning: unused variable ‘io___185’ [-Wunused-variable] 3371 | static cilist io___185 = { 0, 0, 0, fmt_9001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3370:19: warning: unused variable ‘io___184’ [-Wunused-variable] 3370 | static cilist io___184 = { 0, 0, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3369:19: warning: unused variable ‘io___183’ [-Wunused-variable] 3369 | static cilist io___183 = { 0, 0, 0, fmt_2001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3368:19: warning: unused variable ‘io___182’ [-Wunused-variable] 3368 | static cilist io___182 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3367:19: warning: unused variable ‘io___181’ [-Wunused-variable] 3367 | static cilist io___181 = { 0, 6, 0, fmt_7001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3364:20: warning: unused variable ‘i__’ [-Wunused-variable] 3364 | static integer i__; | ^~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3356:13: warning: unused variable ‘i__1’ [-Wunused-variable] 3356 | integer i__1; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘prn2lb_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3493:19: warning: unused variable ‘io___197’ [-Wunused-variable] 3493 | static cilist io___197 = { 0, 0, 0, fmt_3001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3492:19: warning: unused variable ‘io___196’ [-Wunused-variable] 3492 | static cilist io___196 = { 0, 6, 0, fmt_2001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3491:19: warning: unused variable ‘io___194’ [-Wunused-variable] 3491 | static cilist io___194 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3490:19: warning: unused variable ‘io___192’ [-Wunused-variable] 3490 | static cilist io___192 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3489:19: warning: unused variable ‘io___191’ [-Wunused-variable] 3489 | static cilist io___191 = { 0, 6, 0, fmt_2001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3488:19: warning: unused variable ‘io___190’ [-Wunused-variable] 3488 | static cilist io___190 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3485:25: warning: variable ‘imod’ set but not used [-Wunused-but-set-variable] 3485 | static integer i__, imod; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3485:20: warning: unused variable ‘i__’ [-Wunused-variable] 3485 | static integer i__, imod; | ^~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3476:13: warning: unused variable ‘i__1’ [-Wunused-variable] 3476 | integer i__1; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘prn3lb_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3691:19: warning: unused variable ‘io___225’ [-Wunused-variable] 3691 | static cilist io___225 = { 0, 0, 0, fmt_3008, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3690:19: warning: unused variable ‘io___224’ [-Wunused-variable] 3690 | static cilist io___224 = { 0, 0, 0, fmt_9019, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3689:19: warning: unused variable ‘io___223’ [-Wunused-variable] 3689 | static cilist io___223 = { 0, 0, 0, fmt_9018, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3688:19: warning: unused variable ‘io___222’ [-Wunused-variable] 3688 | static cilist io___222 = { 0, 0, 0, fmt_9015, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3687:19: warning: unused variable ‘io___221’ [-Wunused-variable] 3687 | static cilist io___221 = { 0, 0, 0, fmt_9014, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3686:19: warning: unused variable ‘io___220’ [-Wunused-variable] 3686 | static cilist io___220 = { 0, 0, 0, fmt_9013, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3685:19: warning: unused variable ‘io___219’ [-Wunused-variable] 3685 | static cilist io___219 = { 0, 0, 0, fmt_9012, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3684:19: warning: unused variable ‘io___218’ [-Wunused-variable] 3684 | static cilist io___218 = { 0, 0, 0, fmt_9011, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3683:19: warning: unused variable ‘io___217’ [-Wunused-variable] 3683 | static cilist io___217 = { 0, 0, 0, fmt_3009, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3682:19: warning: unused variable ‘io___216’ [-Wunused-variable] 3682 | static cilist io___216 = { 0, 0, 0, fmt_3002, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3681:19: warning: unused variable ‘io___215’ [-Wunused-variable] 3681 | static cilist io___215 = { 0, 6, 0, fmt_3008, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3680:19: warning: unused variable ‘io___214’ [-Wunused-variable] 3680 | static cilist io___214 = { 0, 6, 0, fmt_3007, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3679:19: warning: unused variable ‘io___213’ [-Wunused-variable] 3679 | static cilist io___213 = { 0, 6, 0, fmt_9019, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3678:19: warning: unused variable ‘io___212’ [-Wunused-variable] 3678 | static cilist io___212 = { 0, 6, 0, fmt_9018, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3677:19: warning: unused variable ‘io___211’ [-Wunused-variable] 3677 | static cilist io___211 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3676:19: warning: unused variable ‘io___210’ [-Wunused-variable] 3676 | static cilist io___210 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3675:19: warning: unused variable ‘io___209’ [-Wunused-variable] 3675 | static cilist io___209 = { 0, 6, 0, fmt_9015, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3674:19: warning: unused variable ‘io___208’ [-Wunused-variable] 3674 | static cilist io___208 = { 0, 6, 0, fmt_9014, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3673:19: warning: unused variable ‘io___207’ [-Wunused-variable] 3673 | static cilist io___207 = { 0, 6, 0, fmt_9013, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3672:19: warning: unused variable ‘io___206’ [-Wunused-variable] 3672 | static cilist io___206 = { 0, 6, 0, fmt_9012, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3671:19: warning: unused variable ‘io___205’ [-Wunused-variable] 3671 | static cilist io___205 = { 0, 6, 0, fmt_9011, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3670:19: warning: unused variable ‘io___204’ [-Wunused-variable] 3670 | static cilist io___204 = { 0, 6, 0, fmt_3009, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3669:19: warning: unused variable ‘io___203’ [-Wunused-variable] 3669 | static cilist io___203 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3668:19: warning: unused variable ‘io___201’ [-Wunused-variable] 3668 | static cilist io___201 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3667:19: warning: unused variable ‘io___200’ [-Wunused-variable] 3667 | static cilist io___200 = { 0, 6, 0, fmt_3005, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3666:19: warning: unused variable ‘io___199’ [-Wunused-variable] 3666 | static cilist io___199 = { 0, 6, 0, fmt_3004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3665:19: warning: unused variable ‘io___198’ [-Wunused-variable] 3665 | static cilist io___198 = { 0, 6, 0, fmt_3003, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3662:20: warning: unused variable ‘i__’ [-Wunused-variable] 3662 | static integer i__; | ^~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3654:13: warning: unused variable ‘i__1’ [-Wunused-variable] 3654 | integer i__1; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘subsm_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3989:19: warning: unused variable ‘io___246’ [-Wunused-variable] 3989 | static cilist io___246 = { 0, 6, 0, fmt_1004, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3988:19: warning: unused variable ‘io___243’ [-Wunused-variable] 3988 | static cilist io___243 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3987:19: warning: unused variable ‘io___242’ [-Wunused-variable] 3987 | static cilist io___242 = { 0, 6, 0, 0, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:3986:19: warning: unused variable ‘io___228’ [-Wunused-variable] 3986 | static cilist io___228 = { 0, 6, 0, fmt_1001, 0 }; | ^~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: In function ‘dcsrch_’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:4705:16: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 4705 | if (brackt && (*stp <= stmin || *stp >= stmax) || brackt && stmax - stmin | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c: At top level: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:26:16: warning: ‘c__5’ defined but not used [-Wunused-variable] 26 | static integer c__5 = 5; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:25:16: warning: ‘c__3’ defined but not used [-Wunused-variable] 25 | static integer c__3 = 3; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/lbfgsb_cpp/Lbfgsb.3.0/lbfgsb.c:23:16: warning: ‘c__9’ defined but not used [-Wunused-variable] 23 | static integer c__9 = 9; | ^~~~ [ 10%] Building C object lbfgsb_cpp/CMakeFiles/lbfgsb_cpp.dir/Lbfgsb.3.0/linpack.c.o [ 13%] Building C object lbfgsb_cpp/CMakeFiles/lbfgsb_cpp.dir/Lbfgsb.3.0/s_cmp.c.o [ 17%] Building C object lbfgsb_cpp/CMakeFiles/lbfgsb_cpp.dir/Lbfgsb.3.0/s_copy.c.o [ 20%] Building C object lbfgsb_cpp/CMakeFiles/lbfgsb_cpp.dir/Lbfgsb.3.0/timer.c.o [ 24%] Linking C static library liblbfgsb_cpp.a [ 24%] Built target lbfgsb_cpp [ 27%] Building CXX object armadillo/CMakeFiles/armadillo.dir/src/wrapper1.cpp.o [ 31%] Building CXX object armadillo/CMakeFiles/armadillo.dir/src/wrapper2.cpp.o [ 34%] Linking CXX static library libarmadillo.a [ 34%] Built target armadillo [ 37%] Building CXX object src/lib/CMakeFiles/Kriging.dir/demo/DemoClass.cpp.o [ 41%] Building CXX object src/lib/CMakeFiles/Kriging.dir/demo/DemoFunction.cpp.o [ 44%] Building CXX object src/lib/CMakeFiles/Kriging.dir/demo/DemoArmadilloClass.cpp.o [ 48%] Building CXX object src/lib/CMakeFiles/Kriging.dir/Trend.cpp.o [ 51%] Building CXX object src/lib/CMakeFiles/Kriging.dir/Optim.cpp.o [ 55%] Building CXX object src/lib/CMakeFiles/Kriging.dir/Random.cpp.o [ 58%] Building CXX object src/lib/CMakeFiles/Kriging.dir/LinearAlgebra.cpp.o [ 62%] Building CXX object src/lib/CMakeFiles/Kriging.dir/Covariance.cpp.o [ 65%] Building CXX object src/lib/CMakeFiles/Kriging.dir/Kriging.cpp.o /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘Kriging::KModel Kriging::make_Model(const arma::vec&, std::map, double>*) const’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:120:15: warning: unused variable ‘d’ [-Wunused-variable] 120 | arma::uword d = m_X.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘double Kriging::_logLikelihood(const arma::vec&, arma::vec*, arma::mat*, KModel*, std::map, double>*) const’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:191:17: warning: unused variable ‘p’ [-Wunused-variable] 191 | arma::uword p = m_F.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘std::tuple, arma::Col > Kriging::leaveOneOutVec(const arma::vec&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:497:10: warning: variable ‘loo’ set but not used [-Wunused-but-set-variable] 497 | double loo = -1; | ^~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::fit(const arma::vec&, const arma::mat&, const Trend::RegressionModel&, bool, const std::string&, const std::string&, const Parameters&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1146:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1146 | for (arma::uword i = 0; i < multistart; i++) { // TODO: use some foreach/pragma to let OpenMP work. | ~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1311:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1311 | for (arma::uword i = 0; i < multistart; i++) { // TODO: use some foreach/pragma to let OpenMP work. | ~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘arma::mat Kriging::update_simulate(const arma::vec&, const arma::mat&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1718:15: warning: unused variable ‘d’ [-Wunused-variable] 1718 | arma::uword d = m_X.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1722:15: warning: unused variable ‘n_on’ [-Wunused-variable] 1722 | arma::uword n_on = n_o + n_n; | ^~~~ In file included from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo:669, from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/include/libKriging/utils/lk_armadillo.hpp:6, from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:8: In destructor ‘arma::Mat::~Mat() [with eT = double]’, inlined from ‘arma::Col::~Col()’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Col_bones.hpp:25:7, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_destroy() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:283:35, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:314:14, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:311:7, inlined from ‘std::_Optional_payload<_Tp, false, _Copy, _Move>::~_Optional_payload() [with _Tp = arma::Col; bool _Copy = false; bool _Move = false]’ at /usr/include/c++/14/optional:437:65, inlined from ‘std::_Optional_base, false, false>::~_Optional_base()’ at /usr/include/c++/14/optional:508:12, inlined from ‘constexpr std::optional<_Tp>::optional(std::optional<_Up>&&) [with _Up = arma::Gen, arma::gen_ones>; typename std::enable_if<__and_v >, std::is_constructible<_T1, _U1>, std::is_convertible<_U1, _T1>, std::__not_&>, std::is_constructible<_Tp, std::optional<_Up>&>, std::is_constructible<_Tp, const std::optional<_Up>&&>, std::is_constructible<_Tp, std::optional<_Up>&&>, std::is_convertible&, _Tp>, std::is_convertible&, _Tp>, std::is_convertible&&, _Tp>, std::is_convertible&&, _Tp> > > >, bool>::type = true; _Tp = arma::Col]’ at /usr/include/c++/14/optional:795:2, inlined from ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1860:20: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Mat_meat.hpp:29:6: warning: ‘*(arma::Mat*)((char*)& + offsetof(Parameters, KrigingParameters::beta.std::optional >::.std::_Optional_base, false, false>::)).arma::Mat::n_alloc’ may be used uninitialized [-Wmaybe-uninitialized] 29 | if(n_alloc > 0) | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1865:35: note: ‘’ declared here 1865 | true}; | ^ In destructor ‘arma::Mat::~Mat() [with eT = double]’, inlined from ‘arma::Col::~Col()’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Col_bones.hpp:25:7, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_destroy() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:283:35, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:314:14, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:311:7, inlined from ‘std::_Optional_payload<_Tp, false, _Copy, _Move>::~_Optional_payload() [with _Tp = arma::Col; bool _Copy = false; bool _Move = false]’ at /usr/include/c++/14/optional:437:65, inlined from ‘std::_Optional_base, false, false>::~_Optional_base()’ at /usr/include/c++/14/optional:508:12, inlined from ‘constexpr std::optional<_Tp>::optional(std::optional<_Up>&&) [with _Up = arma::Gen, arma::gen_ones>; typename std::enable_if<__and_v >, std::is_constructible<_T1, _U1>, std::is_convertible<_U1, _T1>, std::__not_&>, std::is_constructible<_Tp, std::optional<_Up>&>, std::is_constructible<_Tp, const std::optional<_Up>&&>, std::is_constructible<_Tp, std::optional<_Up>&&>, std::is_convertible&, _Tp>, std::is_convertible&, _Tp>, std::is_convertible&&, _Tp>, std::is_convertible&&, _Tp> > > >, bool>::type = true; _Tp = arma::Col]’ at /usr/include/c++/14/optional:795:2, inlined from ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1860:20: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Mat_meat.hpp:32:20: warning: ‘((const double**)((char*)& + offsetof(Parameters, KrigingParameters::beta.std::optional >::.std::_Optional_base, false, false>::_M_payload.std::_Optional_payload, false, false, false>::.std::_Optional_payload, true, false, false>::.std::_Optional_payload_base >::_M_payload)))[4]’ may be used uninitialized [-Wmaybe-uninitialized] 32 | memory::release( access::rw(mem) ); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1865:35: note: ‘’ declared here 1865 | true}; | ^ In destructor ‘arma::Mat::~Mat() [with eT = double]’, inlined from ‘arma::Col::~Col()’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Col_bones.hpp:25:7, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_destroy() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:283:35, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:314:14, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:311:7, inlined from ‘std::_Optional_payload<_Tp, false, _Copy, _Move>::~_Optional_payload() [with _Tp = arma::Col; bool _Copy = false; bool _Move = false]’ at /usr/include/c++/14/optional:437:65, inlined from ‘std::_Optional_base, false, false>::~_Optional_base()’ at /usr/include/c++/14/optional:508:12, inlined from ‘constexpr std::optional<_Tp>::optional(std::optional<_Up>&&) [with _Up = arma::Op, arma::op_htrans2>; typename std::enable_if<__and_v >, std::is_constructible<_T1, _U1>, std::is_convertible<_U1, _T1>, std::__not_&>, std::is_constructible<_Tp, std::optional<_Up>&>, std::is_constructible<_Tp, const std::optional<_Up>&&>, std::is_constructible<_Tp, std::optional<_Up>&&>, std::is_convertible&, _Tp>, std::is_convertible&, _Tp>, std::is_convertible&&, _Tp>, std::is_convertible&&, _Tp> > > >, bool>::type = true; _Tp = arma::Col]’ at /usr/include/c++/14/optional:795:2, inlined from ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1867:20: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Mat_meat.hpp:29:6: warning: ‘*(arma::Mat*)((char*)& + offsetof(Parameters, KrigingParameters::beta.std::optional >::.std::_Optional_base, false, false>::)).arma::Mat::n_alloc’ may be used uninitialized [-Wmaybe-uninitialized] 29 | if(n_alloc > 0) | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1872:36: note: ‘’ declared here 1872 | false}; | ^ In destructor ‘arma::Mat::~Mat() [with eT = double]’, inlined from ‘arma::Col::~Col()’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Col_bones.hpp:25:7, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_destroy() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:283:35, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:314:14, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:311:7, inlined from ‘std::_Optional_payload<_Tp, false, _Copy, _Move>::~_Optional_payload() [with _Tp = arma::Col; bool _Copy = false; bool _Move = false]’ at /usr/include/c++/14/optional:437:65, inlined from ‘std::_Optional_base, false, false>::~_Optional_base()’ at /usr/include/c++/14/optional:508:12, inlined from ‘constexpr std::optional<_Tp>::optional(std::optional<_Up>&&) [with _Up = arma::Op, arma::op_htrans2>; typename std::enable_if<__and_v >, std::is_constructible<_T1, _U1>, std::is_convertible<_U1, _T1>, std::__not_&>, std::is_constructible<_Tp, std::optional<_Up>&>, std::is_constructible<_Tp, const std::optional<_Up>&&>, std::is_constructible<_Tp, std::optional<_Up>&&>, std::is_convertible&, _Tp>, std::is_convertible&, _Tp>, std::is_convertible&&, _Tp>, std::is_convertible&&, _Tp> > > >, bool>::type = true; _Tp = arma::Col]’ at /usr/include/c++/14/optional:795:2, inlined from ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1867:20: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Mat_meat.hpp:32:20: warning: ‘((const double**)((char*)& + offsetof(Parameters, KrigingParameters::beta.std::optional >::.std::_Optional_base, false, false>::_M_payload.std::_Optional_payload, false, false, false>::.std::_Optional_payload, true, false, false>::.std::_Optional_payload_base >::_M_payload)))[4]’ may be used uninitialized [-Wmaybe-uninitialized] 32 | memory::release( access::rw(mem) ); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1872:36: note: ‘’ declared here 1872 | false}; | ^ In destructor ‘arma::Mat::~Mat() [with eT = double]’, inlined from ‘arma::Col::~Col()’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Col_bones.hpp:25:7, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_destroy() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:283:35, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:314:14, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:311:7, inlined from ‘std::_Optional_payload<_Tp, false, _Copy, _Move>::~_Optional_payload() [with _Tp = arma::Col; bool _Copy = false; bool _Move = false]’ at /usr/include/c++/14/optional:437:65, inlined from ‘std::_Optional_base, false, false>::~_Optional_base()’ at /usr/include/c++/14/optional:508:12, inlined from ‘constexpr std::optional<_Tp>::optional(std::optional<_Up>&&) [with _Up = arma::eOp, arma::eop_scalar_times>; typename std::enable_if<__and_v >, std::is_constructible<_T1, _U1>, std::is_convertible<_U1, _T1>, std::__not_&>, std::is_constructible<_Tp, std::optional<_Up>&>, std::is_constructible<_Tp, const std::optional<_Up>&&>, std::is_constructible<_Tp, std::optional<_Up>&&>, std::is_convertible&, _Tp>, std::is_convertible&, _Tp>, std::is_convertible&&, _Tp>, std::is_convertible&&, _Tp> > > >, bool>::type = true; _Tp = arma::Col]’ at /usr/include/c++/14/optional:795:2, inlined from ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1882:18: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Mat_meat.hpp:29:6: warning: ‘*(arma::Mat*)((char*)& + offsetof(Parameters, KrigingParameters::beta.std::optional >::.std::_Optional_base, false, false>::)).arma::Mat::n_alloc’ may be used uninitialized [-Wmaybe-uninitialized] 29 | if(n_alloc > 0) | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1887:34: note: ‘’ declared here 1887 | false}; | ^ In destructor ‘arma::Mat::~Mat() [with eT = double]’, inlined from ‘arma::Col::~Col()’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Col_bones.hpp:25:7, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_destroy() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:283:35, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:314:14, inlined from ‘constexpr void std::_Optional_payload_base<_Tp>::_M_reset() [with _Tp = arma::Col]’ at /usr/include/c++/14/optional:311:7, inlined from ‘std::_Optional_payload<_Tp, false, _Copy, _Move>::~_Optional_payload() [with _Tp = arma::Col; bool _Copy = false; bool _Move = false]’ at /usr/include/c++/14/optional:437:65, inlined from ‘std::_Optional_base, false, false>::~_Optional_base()’ at /usr/include/c++/14/optional:508:12, inlined from ‘constexpr std::optional<_Tp>::optional(std::optional<_Up>&&) [with _Up = arma::eOp, arma::eop_scalar_times>; typename std::enable_if<__and_v >, std::is_constructible<_T1, _U1>, std::is_convertible<_U1, _T1>, std::__not_&>, std::is_constructible<_Tp, std::optional<_Up>&>, std::is_constructible<_Tp, const std::optional<_Up>&&>, std::is_constructible<_Tp, std::optional<_Up>&&>, std::is_convertible&, _Tp>, std::is_convertible&, _Tp>, std::is_convertible&&, _Tp>, std::is_convertible&&, _Tp> > > >, bool>::type = true; _Tp = arma::Col]’ at /usr/include/c++/14/optional:795:2, inlined from ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’ at /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1882:18: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/armadillo/tmp/include/armadillo_bits/Mat_meat.hpp:32:20: warning: ‘((const double**)((char*)& + offsetof(Parameters, KrigingParameters::beta.std::optional >::.std::_Optional_base, false, false>::_M_payload.std::_Optional_payload, false, false, false>::.std::_Optional_payload, true, false, false>::.std::_Optional_payload_base >::_M_payload)))[4]’ may be used uninitialized [-Wmaybe-uninitialized] 32 | memory::release( access::rw(mem) ); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp: In member function ‘void Kriging::update(const arma::vec&, const arma::mat&, bool)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/Kriging.cpp:1887:34: note: ‘’ declared here 1887 | false}; | ^ [ 68%] Building CXX object src/lib/CMakeFiles/Kriging.dir/NuggetKriging.cpp.o /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp: In member function ‘NuggetKriging::KModel NuggetKriging::make_Model(const arma::vec&, double, std::map, double>*) const’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:123:15: warning: unused variable ‘d’ [-Wunused-variable] 123 | arma::uword d = m_X.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp: In member function ‘void NuggetKriging::fit(const arma::vec&, const arma::mat&, const Trend::RegressionModel&, bool, const std::string&, const std::string&, const Parameters&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:904:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 904 | for (arma::uword i = 0; i < multistart; i++) { | ~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp: In member function ‘arma::mat NuggetKriging::update_simulate(const arma::vec&, const arma::mat&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:1408:15: warning: unused variable ‘d’ [-Wunused-variable] 1408 | arma::uword d = m_X.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:1412:15: warning: unused variable ‘n_on’ [-Wunused-variable] 1412 | arma::uword n_on = n_o + n_n; | ^~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp: In member function ‘double NuggetKriging::_logMargPost(const arma::vec&, arma::vec*, KModel*, std::map, double>*) const’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:433:23: warning: ‘_sigma2’ may be used uninitialized [-Wmaybe-uninitialized] 433 | double log_S_2 = log(_sigma2 * (n - p)); | ~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:370:10: note: ‘_sigma2’ was declared here 370 | double _sigma2; | ^~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:447:48: warning: ‘_nugget’ may be used uninitialized [-Wmaybe-uninitialized] 447 | double t = arma::accu(CL / _theta) + _nugget / _sigma2; | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NuggetKriging.cpp:371:10: note: ‘_nugget’ was declared here 371 | double _nugget; | ^~~~~~~ [ 72%] Building CXX object src/lib/CMakeFiles/Kriging.dir/NoiseKriging.cpp.o /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp: In member function ‘NoiseKriging::KModel NoiseKriging::make_Model(const arma::vec&, double, std::map, double>*) const’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp:121:15: warning: unused variable ‘d’ [-Wunused-variable] 121 | arma::uword d = m_X.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp: In member function ‘void NoiseKriging::fit(const arma::vec&, const arma::vec&, const arma::mat&, const Trend::RegressionModel&, bool, const std::string&, const std::string&, const Parameters&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp:516:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 516 | for (arma::uword i = 0; i < multistart; i++) { | ~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp:605:50: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 605 | || (sol_to_b < arma::datum::eps) && (result.num_iters <= 2) // we fastly converged to one bound | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp: In member function ‘arma::mat NoiseKriging::update_simulate(const arma::vec&, const arma::vec&, const arma::mat&)’: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp:1000:15: warning: unused variable ‘d’ [-Wunused-variable] 1000 | arma::uword d = m_X.n_cols; | ^ /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/src/lib/NoiseKriging.cpp:1004:15: warning: unused variable ‘n_on’ [-Wunused-variable] 1004 | arma::uword n_on = n_o + n_n; | ^~~~ [ 75%] Building CXX object src/lib/CMakeFiles/Kriging.dir/KrigingLoader.cpp.o [ 79%] Building CXX object src/lib/CMakeFiles/Kriging.dir/lkalloc.cpp.o [ 82%] Building CXX object src/lib/CMakeFiles/Kriging.dir/Bench.cpp.o [ 86%] Building CXX object src/lib/CMakeFiles/Kriging.dir/CacheFunction.cpp.o [ 89%] Building CXX object src/lib/CMakeFiles/Kriging.dir/utils/base64.cpp.o [ 93%] Building CXX object src/lib/CMakeFiles/Kriging.dir/utils/jsonutils.cpp.o [ 96%] Building CXX object src/lib/CMakeFiles/Kriging.dir/__/__/version.cpp.o [100%] Linking CXX static library libKriging.a [100%] Built target Kriging -- Install configuration: "Release" -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Cube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_wishrnd.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_nonzeros.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_vecnorm_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_norm2est_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_affmul_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_row_as_mat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_roots_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_kron_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eop_core_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eop_aux.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_toeplitz_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_chi2rnd_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_misc_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_repelem_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_interp2.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpSubview_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_minus_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/hdf5_name.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_find_unique.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_pinv.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_mean_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_cross_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_mean_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_intersect_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_spones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_reverse.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_stddev_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arrayops_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_min_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/access.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Col_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtOpCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_reverse_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_repmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/CubeToMatOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/GenCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/wall_clock_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_interp1.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_htrans_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spsolve_factoriser_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtGlueCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpBase_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_size.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/hdf5_misc.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_vectorise_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_cov_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpSubview_iterators_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpRow_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_hist_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_chol.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/strip.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_range_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpToDGlue_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Gen_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_reshape_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/diagview_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_cube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_nonzeros_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/gmm_diag_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/auxlib_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Op_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_shuffle_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cov_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_approx_equal.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_repmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spdiagview_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_diff_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_randi.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_plus.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_rank.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_hist_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_var.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_relational_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/running_stat_vec_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_diff.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/typedef_mat_fixed.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_min_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_normalise.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_max_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_misc_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_norm_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_range.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_cross_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/diskio_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_diagvec_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_randu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/trimat_helper.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_each_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpSubview_col_list_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cond_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/debug.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_find_unique_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_minus.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_cube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_cumprod.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trig.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/diagmat_proxy.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_misc.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_elem2_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/cond_rel_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/promote_type.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpProxy.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_histc_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_inv_sympd.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_mvnrnd_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_inv.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_join.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_cube_slices_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_plus_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_trapz_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_toeplitz.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sprandu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_plus_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_toeplitz_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eig_gen.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_vectorise_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sort_index.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_trapz_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SparseGenMatProd_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_as_dense_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sum.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_chol_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_svds.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/memory.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_max_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_DoubleShiftQR_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SizeCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpCol_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/def_blas.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtGlue_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sum_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/gmm_misc_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/wall_clock_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_relational_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_kron.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mul_gemv.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_resize.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eGlue_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/field_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/band_helper.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_diags_spdiags.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_TridiagEigen_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtSpOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/field_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Row_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Cube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/def_arpack.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_cube_slices_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_princomp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Glue_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_rcond_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_atan2_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_quantile_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/def_lapack.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpRow_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_cumsum.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_polyfit_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_cross.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_flip_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_relational.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtSpGlue_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/upgrade_val.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sort_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spsolve_factoriser_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trimat_ind.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/gmm_full_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_min_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpValProxy_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_hist_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/OpCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/running_stat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_relational_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/restrictors.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_strans_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_index_min.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_TridiagEigen_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_nonzeros_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_symmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_log_normpdf.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_unique.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Op_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eOpCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/config.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_median.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_all_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_logmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SymEigsShiftSolver_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_histc.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/constants.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sort.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_sum_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_diagmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fft_engine_fftw3.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_any.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_DoubleShiftQR_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/cond_rel_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_trimat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_det_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_unique_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SymEigsShiftSolver_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/auxlib_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/translate_fftw3.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/running_stat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_inv_spd_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_wishrnd_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_expmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_clamp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_strans_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/csv_name.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_norm.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_diagvec.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_version.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_polyfit_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_min.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_spsolve.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_cube_each_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_var_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_schur.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_elem1_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_kron_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpMat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_schur_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_static_check.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_relational_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_relational_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_strans.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_reshape.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_plus_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_unique_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_resize_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/def_fftw3.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_symmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/gmm_misc_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_mixed_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/sym_helper.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_polyval_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_expmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eye.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Mat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_max_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_cube_each_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_index_max_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Base_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trans.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_minus_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_max_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/xtrans_mat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eOpCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_rng_cxx03.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cx_scalar_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trace.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_DenseGenMatProd_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_hypot_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arrayops_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_powmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_var_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sqrtmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sprandn.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_shift_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_field_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_chol_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fft_engine_kissfft.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_flip.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_shift_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/span.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_prod_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spdiagview_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_speye.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_accu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_schur.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sum_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_quantile_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/compiler_setup_post.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sqrtmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_solve_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/CubeToMatOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_UpperHessenbergQR_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_join_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sort_index_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_any_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/distr_param.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fill.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_powext.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpToDOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpGlue_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/injector_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_index_min_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_symmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_find_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_mvnrnd_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_reverse_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_inv_gen_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/def_superlu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/translate_superlu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_dotext_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trunc_exp.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_solve.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_diagmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtGlueCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Gen_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_minus_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_regspace.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_svd.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_find.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_expmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_merge_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_htrans_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/typedef_mat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_toeplitz_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_var_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_norm2est_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_reverse_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtSpGlue_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_normalise_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtSpReduceOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_vecnorm_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_fft.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cond_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_normcdf.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/typedef_elem_check.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_symmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_strans_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_inv_gen_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_trimat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_diagmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_vectorise.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_diagvec_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_diagmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SortEigenvalue.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_cube_schur.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_quantile.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_powext_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_times_misc_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpSubview_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_cmath.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SizeMat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/compiler_setup.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_as_scalar.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/typedef_elem.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_conv.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mp_misc.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_dotext_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_mvnrnd.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_fft2.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Col_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_any_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eglue_core_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_chi2rnd_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_stddev_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_dot_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eGlue_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_htrans_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_relational_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mul_herk.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_norm_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SizeMat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_elem.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/translate_atlas.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_cube_times.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_toeplitz_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SymEigsSolver_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_cor.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_roots.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_symmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eGlueCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_princomp.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Glue_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_stddev_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/xvec_htrans_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_join_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_times_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpMat_iterators_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_reverse_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Proxy.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtSpOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpToDGlue_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_normalise_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_cov_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_hess.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_times_misc_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/GlueCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_div.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_solve_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_all.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_logmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eigs_gen.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_cov.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_roots_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_rcond_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_cube_relational.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eGlueCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_col_as_mat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/unwrap_spmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_kron_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_zeros.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_config.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_each_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/sp_auxlib_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_n_unique.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_cor_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_rank_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_atan2_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_index_max.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_fft_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_relational_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/unwrap.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_clamp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trapz.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Row_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_repmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_princomp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_times.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_mean.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_strans_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SymEigsSolver_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_max_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cor_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_kron_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_normpdf.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_all_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_times_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_as_dense_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/BaseCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_index_min_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpSubview_col_list_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/def_atlas.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_shift_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sort_index_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_merge_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_randn.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cumsum_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpMat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_hist.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/include_hdf5.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/compiler_check.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_schur_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_index_max_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_misc_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_powmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_normalise_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SizeCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_repmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_field_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_orth_null_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sylvester.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_cube_div.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mul_syrk.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_orth_null_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/OpCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_inplace_strans.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/translate_lapack.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_min_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_randg.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_min_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_rel_comparators.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sort_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/constants_old.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/sp_auxlib_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_min_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trunc_log.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/injector_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_mean_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_stddev.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_logmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_wishrnd_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_DenseGenMatProd_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_htrans_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_col_as_mat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_log_det_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_diff_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_nonzeros_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/translate_arpack.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_elem2_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_cube_minus.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_prod.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_find_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_find_unique_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/BaseCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_ones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mul_gemm_mixed.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_sum_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_powmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/GenCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_cx_attrib.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_trimat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_flip_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_repelem_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_diagvec_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_ostream_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_max_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Base_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_repelem.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_times_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/Mat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_norm_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_intersect_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/GlueCube_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_hypot_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_qz.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/xvec_htrans_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_nonzeros_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_sqrtmat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_fft_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/include_superlu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_min_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/gmm_diag_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_conv_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_chi2rnd.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eps.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_minus_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_det.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_pinv_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtGlue_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_inplace_trans.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/MapMat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_pinv_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_conv_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_diagvec_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtOpCube_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_stddev_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_log_det.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_times_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mul_gemm.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cumsum_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_UpperHessenbergEigen_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_range_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpCol_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_mean_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_row_as_mat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_shift_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_det_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_max.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_inv_spd_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_vecnorm_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/running_stat_vec_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/podarray_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_str.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_GenEigsSolver_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_hist_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_vecnorm_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpToDOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_trimat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_median_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/MapMat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_numel.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/subview_elem1_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_affmul_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_diagmat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cor_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_conv_to.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpValProxy_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_log_det_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_EigsSelect.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpBase_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_clamp.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_median_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cumprod_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SparseGenRealShiftSolve_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cumprod_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eigs_sym.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_orth_null.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_shift.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_intersect.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_reshape_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_lu.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eig_sym.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/xtrans_mat_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_max_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_vectorise_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_powext_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_ostream_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_polyval.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_ostream.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_misc_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_kmeans.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eop_core_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/eglue_core_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_shuffle.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_normalise_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_cor_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spglue_relational_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_repmat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/podarray_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_min_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_var_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_join_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_dot.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_shuffle_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtSpReduceOp_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_max_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_dot_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_norm_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_resize_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/unwrap_cube.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cov_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_mixed_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/operator_cube_plus.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SparseGenRealShiftSolve_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_rng.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_polyfit.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_prod_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_vecnorm.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/ProxyCube.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_cx_scalar_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/mtOp_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/arma_forward.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_qr.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/SpGlue_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/newarp_SparseGenMatProd_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_vectorise_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/gmm_full_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_eig_pair.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_histc_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_polyval_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_sp_plus_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_randperm.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/diagview_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/translate_blas.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/spop_trimat_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/op_rank_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/traits.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/fn_cond_rcond.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/diskio_meat.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo_bits/glue_join_bones.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/armadillo -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/libarmadillo.a -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/pkgconfig/armadillo.pc -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/share/Armadillo/CMake/ArmadilloLibraryDepends.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/share/Armadillo/CMake/ArmadilloLibraryDepends-release.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/share/Armadillo/CMake/ArmadilloConfig.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/share/Armadillo/CMake/ArmadilloConfigVersion.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/liblbfgsb_cpp.a -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/lbfgsb_cpp/lbfgsb.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/cmake/lbfgsb_cpp/lbfgsb_cppConfig.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/cmake/lbfgsb_cpp/lbfgsb_cppConfig-release.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/libKriging.a -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/cmake/libKriging.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/lib/cmake/libKriging-release.cmake -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/libKriging_exports.h -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/Bench.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/CacheFunction.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/Covariance.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/Kriging.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/KrigingException.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/KrigingLoader.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/LinearAlgebra.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/LinearRegression.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/LinearRegressionOptim.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/NoiseKriging.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/NuggetKriging.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/Optim.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/Random.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/Trend.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/demo/DemoArmadilloClass.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/demo/DemoClass.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/demo/DemoFunction.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/demo/demo.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/libKriging.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/ExplicitCopySpecifier.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/LinearHashStorage.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/cache_details.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/custom_hash_function.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/data_from_arma_vec.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/jsonutils.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/lk_armadillo.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/lkalloc.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/nlohmann/json.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/nlohmann/json_fwd.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/utils/utils.hpp -- Installing: /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build/installed/include/libKriging/version.hpp [100%] Built target install.lib gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/libK/build' R Under development (unstable) (2025-05-01 r88184) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. R> Rcpp::compileAttributes(pkgdir = '.', verbose = TRUE) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/kriging_binding.cpp: Rcpp::List new_Kriging(std::string kernel) Rcpp::List new_KrigingFit(arma::vec y, arma::mat X, std::string kernel, std::string regmodel = "constant", bool normalize = false, std::string optim = "BFGS", std::string objective = "LL", Rcpp::Nullable parameters = R_NilValue) void kriging_fit(Rcpp::List k, arma::vec y, arma::mat X, std::string regmodel = "constant", bool normalize = false, std::string optim = "BFGS", std::string objective = "LL", Rcpp::Nullable parameters = R_NilValue) Rcpp::List kriging_copy(Rcpp::List k) Rcpp::List kriging_model(Rcpp::List k) std::string kriging_summary(Rcpp::List k) Rcpp::List kriging_predict(Rcpp::List k, arma::mat X_n, bool return_stdev = true, bool return_cov = false, bool return_deriv = false) arma::mat kriging_simulate(Rcpp::List k, int nsim, int seed, arma::mat X_n, bool will_update = false) arma::mat kriging_update_simulate(Rcpp::List k, arma::vec y_u, arma::mat X_u) void kriging_update(Rcpp::List k, arma::vec y_u, arma::mat X_u, bool refit = true) void kriging_save(Rcpp::List k, std::string filename) arma::mat kriging_covMat(Rcpp::List k, arma::mat X1, arma::mat X2) Rcpp::List kriging_logLikelihoodFun(Rcpp::List k, arma::vec theta, bool return_grad = false, bool return_hess = false, bool bench = false) double kriging_logLikelihood(Rcpp::List k) Rcpp::List kriging_leaveOneOutFun(Rcpp::List k, arma::vec theta, bool return_grad = false, bool bench = false) Rcpp::List kriging_leaveOneOutVec(Rcpp::List k, arma::vec theta) double kriging_leaveOneOut(Rcpp::List k) Rcpp::List kriging_logMargPostFun(Rcpp::List k, arma::vec theta, bool return_grad = false, bool bench = false) double kriging_logMargPost(Rcpp::List k) std::string kriging_kernel(Rcpp::List k) std::string kriging_optim(Rcpp::List k) std::string kriging_objective(Rcpp::List k) arma::mat kriging_X(Rcpp::List k) arma::vec kriging_centerX(Rcpp::List k) arma::vec kriging_scaleX(Rcpp::List k) arma::vec kriging_y(Rcpp::List k) double kriging_centerY(Rcpp::List k) double kriging_scaleY(Rcpp::List k) bool kriging_normalize(Rcpp::List k) std::string kriging_regmodel(Rcpp::List k) arma::mat kriging_F(Rcpp::List k) arma::mat kriging_T(Rcpp::List k) arma::mat kriging_M(Rcpp::List k) arma::vec kriging_z(Rcpp::List k) arma::vec kriging_beta(Rcpp::List k) bool kriging_is_beta_estim(Rcpp::List k) arma::vec kriging_theta(Rcpp::List k) bool kriging_is_theta_estim(Rcpp::List k) double kriging_sigma2(Rcpp::List k) bool kriging_is_sigma2_estim(Rcpp::List k) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/linalg.cpp: double linalg_get_num_nugget() void linalg_set_num_nugget(double nugget) void linalg_check_chol_rcond(bool cr) bool linalg_chol_rcond_checked() arma::mat linalg_chol_safe(arma::mat X) void linalg_set_chol_warning(bool warn) double linalg_rcond_approx_chol(arma::mat X) double linalg_rcond_chol(arma::mat X) arma::mat linalg_chol_block(arma::mat C, arma::mat Loo) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/load.cpp: Rcpp::List kriging_load(std::string filename) Rcpp::List noisekriging_load(std::string filename) Rcpp::List nuggetkriging_load(std::string filename) std::string class_saved(std::string filename) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/noisekriging_binding.cpp: Rcpp::List new_NoiseKriging(std::string kernel) Rcpp::List new_NoiseKrigingFit(arma::vec y, arma::vec noise, arma::mat X, std::string kernel, std::string regmodel = "constant", bool normalize = false, std::string optim = "BFGS", std::string objective = "LL", Rcpp::Nullable parameters = R_NilValue) void noisekriging_fit(Rcpp::List k, arma::vec y, arma::vec noise, arma::mat X, std::string regmodel = "constant", bool normalize = false, std::string optim = "BFGS", std::string objective = "LL", Rcpp::Nullable parameters = R_NilValue) Rcpp::List noisekriging_copy(Rcpp::List k) Rcpp::List noisekriging_model(Rcpp::List k) std::string noisekriging_summary(Rcpp::List k) Rcpp::List noisekriging_predict(Rcpp::List k, arma::mat X_n, bool return_stdev = true, bool return_cov = false, bool return_deriv = false) arma::mat noisekriging_simulate(Rcpp::List k, int nsim, int seed, arma::mat X_n, arma::vec with_noise, bool will_update = false) arma::mat noisekriging_update_simulate(Rcpp::List k, arma::vec y_u, arma::vec noise_u, arma::mat X_u) void noisekriging_update(Rcpp::List k, arma::vec y_u, arma::vec noise_u, arma::mat X_u, bool refit = true) void noisekriging_save(Rcpp::List k, std::string filename) arma::mat noisekriging_covMat(Rcpp::List k, arma::mat X1, arma::mat X2) Rcpp::List noisekriging_logLikelihoodFun(Rcpp::List k, arma::vec theta_sigma2, bool return_grad = false, bool bench = false) double noisekriging_logLikelihood(Rcpp::List k) std::string noisekriging_kernel(Rcpp::List k) std::string noisekriging_optim(Rcpp::List k) std::string noisekriging_objective(Rcpp::List k) arma::mat noisekriging_X(Rcpp::List k) arma::vec noisekriging_centerX(Rcpp::List k) arma::vec noisekriging_scaleX(Rcpp::List k) arma::vec noisekriging_y(Rcpp::List k) arma::vec noisekriging_noise(Rcpp::List k) double noisekriging_centerY(Rcpp::List k) double noisekriging_scaleY(Rcpp::List k) bool noisekriging_normalize(Rcpp::List k) std::string noisekriging_regmodel(Rcpp::List k) arma::mat noisekriging_F(Rcpp::List k) arma::mat noisekriging_T(Rcpp::List k) arma::mat noisekriging_M(Rcpp::List k) arma::vec noisekriging_z(Rcpp::List k) arma::vec noisekriging_beta(Rcpp::List k) bool noisekriging_is_beta_estim(Rcpp::List k) arma::vec noisekriging_theta(Rcpp::List k) bool noisekriging_is_theta_estim(Rcpp::List k) double noisekriging_sigma2(Rcpp::List k) bool noisekriging_is_sigma2_estim(Rcpp::List k) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/nuggetkriging_binding.cpp: Rcpp::List new_NuggetKriging(std::string kernel) Rcpp::List new_NuggetKrigingFit(arma::vec y, arma::mat X, std::string kernel, std::string regmodel = "constant", bool normalize = false, std::string optim = "BFGS", std::string objective = "LL", Rcpp::Nullable parameters = R_NilValue) void nuggetkriging_fit(Rcpp::List k, arma::vec y, arma::mat X, std::string regmodel = "constant", bool normalize = false, std::string optim = "BFGS", std::string objective = "LL", Rcpp::Nullable parameters = R_NilValue) Rcpp::List nuggetkriging_copy(Rcpp::List k) Rcpp::List nuggetkriging_model(Rcpp::List k) std::string nuggetkriging_summary(Rcpp::List k) Rcpp::List nuggetkriging_predict(Rcpp::List k, arma::mat X_n, bool return_stdev = true, bool return_cov = false, bool return_deriv = false) arma::mat nuggetkriging_simulate(Rcpp::List k, int nsim, int seed, arma::mat X_n, bool with_nugget = true, bool will_update = false) arma::mat nuggetkriging_update_simulate(Rcpp::List k, arma::vec y_u, arma::mat X_u) void nuggetkriging_update(Rcpp::List k, arma::vec y_u, arma::mat X_u, bool refit = true) void nuggetkriging_save(Rcpp::List k, std::string filename) arma::mat nuggetkriging_covMat(Rcpp::List k, arma::mat X1, arma::mat X2) Rcpp::List nuggetkriging_logLikelihoodFun(Rcpp::List k, arma::vec theta_alpha, bool return_grad = false, bool bench = false) double nuggetkriging_logLikelihood(Rcpp::List k) Rcpp::List nuggetkriging_logMargPostFun(Rcpp::List k, arma::vec theta, bool return_grad = false, bool bench = false) double nuggetkriging_logMargPost(Rcpp::List k) std::string nuggetkriging_kernel(Rcpp::List k) std::string nuggetkriging_optim(Rcpp::List k) std::string nuggetkriging_objective(Rcpp::List k) arma::mat nuggetkriging_X(Rcpp::List k) arma::vec nuggetkriging_centerX(Rcpp::List k) arma::vec nuggetkriging_scaleX(Rcpp::List k) arma::vec nuggetkriging_y(Rcpp::List k) double nuggetkriging_centerY(Rcpp::List k) double nuggetkriging_scaleY(Rcpp::List k) bool nuggetkriging_normalize(Rcpp::List k) std::string nuggetkriging_regmodel(Rcpp::List k) arma::mat nuggetkriging_F(Rcpp::List k) arma::mat nuggetkriging_T(Rcpp::List k) arma::mat nuggetkriging_M(Rcpp::List k) arma::vec nuggetkriging_z(Rcpp::List k) arma::vec nuggetkriging_beta(Rcpp::List k) bool nuggetkriging_is_beta_estim(Rcpp::List k) arma::vec nuggetkriging_theta(Rcpp::List k) bool nuggetkriging_is_theta_estim(Rcpp::List k) double nuggetkriging_sigma2(Rcpp::List k) bool nuggetkriging_is_sigma2_estim(Rcpp::List k) double nuggetkriging_nugget(Rcpp::List k) bool nuggetkriging_is_nugget_estim(Rcpp::List k) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/optim.cpp: bool optim_is_reparametrized() void optim_use_reparametrize(bool reparametrize) double optim_get_theta_lower_factor() void optim_set_theta_lower_factor(double theta_lower_factor) double optim_get_theta_upper_factor() void optim_set_theta_upper_factor(double theta_upper_factor) bool optim_variogram_bounds_heuristic_used() void optim_use_variogram_bounds_heuristic(bool variogram_bounds_heuristic) void optim_log(int l) int optim_get_max_iteration() void optim_set_max_iteration(int max_iteration) double optim_get_gradient_tolerance() void optim_set_gradient_tolerance(double gradient_tolerance) double optim_get_objective_rel_tolerance() void optim_set_objective_rel_tolerance(double objective_rel_tolerance) Exports from /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/random.cpp: void random_reset_seed(unsigned int seed) double random_randu() arma::vec random_randu_vec(unsigned int n) arma::mat random_randu_mat(unsigned int n, unsigned int d) arma::mat random_randn_mat(unsigned int n, unsigned int d) /home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/R/RcppExports.R updated. R> ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c kriging_binding.cpp -o kriging_binding.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c linalg.cpp -o linalg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c load.cpp -o load.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c noisekriging_binding.cpp -o noisekriging_binding.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nuggetkriging_binding.cpp -o nuggetkriging_binding.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c optim.cpp -o optim.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst/"/include -include "libKriging/utils/lkalloc.hpp" -DARMA_ALIEN_MEM_ALLOC_FUNCTION=lkalloc::malloc -DARMA_ALIEN_MEM_FREE_FUNCTION=lkalloc::free -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rlibkriging.so RcppExports.o kriging_binding.o linalg.o load.o noisekriging_binding.o nuggetkriging_binding.o optim.o random.o -fopenmp -L/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src/../inst//lib -lKriging -larmadillo -llbfgsb_cpp /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libarpack.so -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnXs9jX/R.INSTALL14308b5591ba70/rlibkriging/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rlibkriging/00new/rlibkriging/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlibkriging) checking R.cache_0.17.0.tar.gz ... checking aroma.affymetrix_3.2.2.tar.gz ... checking aroma.cn_1.7.1.tar.gz ... checking aroma.core_3.3.1.tar.gz ... checking csodata_1.5.0.tar.gz ... checking DiceView_3.1-0.tar.gz ... checking PCRA_1.2.tar.gz ... checking facmodTS_1.0.tar.gz ... checking precommit_0.4.3.tar.gz ... checking PSCBS_0.68.0.tar.gz ... checking R.filesets_2.15.1.tar.gz ... checking R.rsp_0.46.0.tar.gz ... checking RKorAPClient_1.0.0.tar.gz ... checking repmis_0.5.tar.gz ... checking scholar_0.2.4.tar.gz ... checking stepR_2.1-10.tar.gz ... checking styler_1.10.3.tar.gz ... checking TreeTools_1.13.1.tar.gz ... checking jointseg_1.0.2.tar.gz ... checking ragtop_1.1.1.tar.gz ... Depends: Package: R.cache Depends: R (>= 2.14.0) Imports: utils, R.methodsS3 (>= 1.8.1), R.oo (>= 1.24.0), R.utils (>= 2.10.1), digest (>= 0.6.13) Timings: user system elapsed R.cache 29.082 4.089 46.853 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 6 13 Check results summary: R.cache ... OK rdepends_aroma.affymetrix ... NOTE * checking Rd cross-references ... NOTE rdepends_aroma.cn ... OK rdepends_aroma.core ... NOTE * checking Rd cross-references ... NOTE rdepends_csodata ... OK rdepends_DiceView ... OK rdepends_facmodTS ... OK rdepends_jointseg ... OK rdepends_PCRA ... NOTE * checking Rd files ... [0s/0s] NOTE * checking for unstated dependencies in ‘demo’ ... NOTE rdepends_precommit ... OK rdepends_PSCBS ... OK rdepends_R.filesets ... OK rdepends_R.rsp ... OK rdepends_ragtop ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_repmis ... NOTE * checking Rd cross-references ... NOTE * checking for non-standard things in the check directory ... NOTE rdepends_RKorAPClient ... OK rdepends_scholar ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_stepR ... OK rdepends_styler ... OK rdepends_TreeTools ... OK Check results changes: Package: jointseg Check: CRAN incoming feasibility Old result: NOTE Package: precommit Check: CRAN incoming feasibility Old result: NOTE Package: ragtop Check: CRAN incoming feasibility Old result: NOTE Package: scholar Check: CRAN incoming feasibility Old result: NOTE Package: styler Check: DESCRIPTION meta-information Old result: NOTE New result: OK