* using log directory 'd:/RCompile/CRANincoming/R-devel/Qval.Rcheck' * using R Under development (unstable) (2024-01-31 r85845 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'Qval/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Qval' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Haijiang Qin ' New submission Possibly misspelled words in DESCRIPTION: CDM (9:112) Chiu (9:314) GDI (9:295) MLR (9:586) Najera (9:457) Torre (9:222, 9:306, 9:401) al (9:467, 9:599) de (9:216, 9:300, 9:395) et (9:464, 9:596) stepwise (9:357) The Title field should be in title case. Current version is: 'The Q-matrix Validation Methods Framework' In title case that is: 'The Q-Matrix Validation Methods Framework' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Qval' can be installed ... WARNING Found the following significant warnings: Note: possible error in 'designmatrix(Ki = mk[1], ': unused argument (Ki = mk[1]) Note: possible error in 'designmatrix(Ki = mk[i], ': unused argument (Ki = mk[i]) See 'd:/RCompile/CRANincoming/R-devel/Qval.Rcheck/00install.out' for details. Information on the location(s) of code generating the 'Note's can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to 'yes'. * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard files/directories found at top level: 'CRAN-SUBMISSION' 'Qval.Rproj' 'cran-comments.md' 'docs' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: 'GDINA:::LikNR' 'GDINA:::l2m' 'GDINA:::m2l' 'GDINA:::partial_order2' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s] NOTE CDM: possible error in designmatrix(Ki = mk[1], model = "GDINA"): unused argument (Ki = mk[1]) CDM: possible error in designmatrix(Ki = mk[i], model = "GDINA"): unused argument (Ki = mk[i]) CDM: no visible global function definition for 'Ya.frame' Wald.test: no visible global function definition for 'pchisq' get.MLR: no visible global function definition for 'glm' get.MLR: no visible global function definition for 'as.formula' get.MLRlasso: no visible global function definition for 'predict' get.MLRlasso: no visible global function definition for 'coef' sim.MQ: no visible global function definition for 'runif' sim.data: no visible global function definition for 'runif' sim.data: no visible global function definition for 'qnorm' sim.data: no visible global function definition for 'rnorm' sim.data: no visible global function definition for 'sd' Undefined global functions or variables: Ya.frame as.formula coef glm pchisq predict qnorm rnorm runif sd Consider adding importFrom("stats", "as.formula", "coef", "glm", "pchisq", "predict", "qnorm", "rnorm", "runif", "sd") to your NAMESPACE file. * checking Rd files ... NOTE checkRd: (-1) validation.Rd:118: Lost braces; missing escapes or markup? 118 | attributes set to \eqn{\mathbf{0}} (i.e., \eqn{\mathbf{q}} = {00...0}) as a starting point. | ^ checkRd: (-1) validation.Rd:196: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:197: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:198-199: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:200: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:201: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:202: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:203: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:208: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:209: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:210-211: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:212-214: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'CDM.Rd': \examples lines wider than 100 characters: example.CDM.obj <- CDM(example.data$dat, example.Q, model = "GDINA", method = "EM", maxitr = 2000, verbose = 1) example.CDM.obj <- CDM(example.data$dat, example.Q, model = "GDINA", method = "BM", maxitr = 1000, verbose = 2) example.CDM.obj <- CDM(example.data$dat, example.Q, model = "ACDM", method = "EM", maxitr = 2000, verbose = 1) Rd file 'validation.Rd': \examples lines wider than 100 characters: Q.GDI.obj <- validation(example.data$dat, example.MQ, method = "GDI", iter.level = "item", maxitr = 150) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [45s] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed validation 27.11 0.45 27.56 * checking for unstated dependencies in 'tests' ... OK * checking tests ... [32s] OK Running 'builde_manul.R' Running 'demo.R' [31s] * checking PDF version of manual ... [19s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character ^^B (U+0002) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character χ (U+03C7) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 7 NOTEs