* using log directory ‘/srv/hornik/tmp/CRAN/Qval.Rcheck’ * using R Under development (unstable) (2024-01-31 r85845) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘Qval/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Qval’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Haijiang Qin ’ New submission Possibly misspelled words in DESCRIPTION: CDM (9:112) Chiu (9:310) GDI (9:291) MLR (9:541, 9:576) Najera (9:453) Torre (9:218, 9:302, 9:397) al (9:463, 9:589) de (9:212, 9:296, 9:391) et (9:460, 9:586) The Title field should be in title case. Current version is: ‘The Q-matrix Validation Methods Framework’ In title case that is: ‘The Q-Matrix Validation Methods Framework’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Qval’ can be installed ... [5s/5s] WARNING Found the following significant warnings: Note: possible error in 'designmatrix(Ki = mk[1], ': unused argument (Ki = mk[1]) Note: possible error in 'designmatrix(Ki = mk[i], ': unused argument (Ki = mk[i]) See ‘/srv/hornik/tmp/CRAN/Qval.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard files/directories found at top level: ‘CRAN-SUBMISSION’ ‘Qval.Rproj’ ‘cran-comments.md’ ‘docs’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘GDINA:::LikNR’ ‘GDINA:::l2m’ ‘GDINA:::m2l’ ‘GDINA:::partial_order2’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/9s] NOTE CDM: possible error in designmatrix(Ki = mk[1], model = "GDINA"): unused argument (Ki = mk[1]) CDM: possible error in designmatrix(Ki = mk[i], model = "GDINA"): unused argument (Ki = mk[i]) CDM: no visible global function definition for ‘Ya.frame’ Wald.test: no visible global function definition for ‘pchisq’ get.MLR: no visible global function definition for ‘glm’ get.MLR: no visible global function definition for ‘as.formula’ get.MLRlasso: no visible global function definition for ‘predict’ get.MLRlasso: no visible global function definition for ‘coef’ sim.MQ: no visible global function definition for ‘runif’ sim.data: no visible global function definition for ‘runif’ sim.data: no visible global function definition for ‘qnorm’ sim.data: no visible global function definition for ‘rnorm’ sim.data: no visible global function definition for ‘sd’ Undefined global functions or variables: Ya.frame as.formula coef glm pchisq predict qnorm rnorm runif sd Consider adding importFrom("stats", "as.formula", "coef", "glm", "pchisq", "predict", "qnorm", "rnorm", "runif", "sd") to your NAMESPACE file. * checking Rd files ... [0s/0s] NOTE checkRd: (-1) validation.Rd:118: Lost braces; missing escapes or markup? 118 | attributes set to \eqn{\mathbf{0}} (i.e., \eqn{\mathbf{q}} = {00...0}) as a starting point. | ^ checkRd: (-1) validation.Rd:196: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:197: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:198-199: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:200: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:201: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:202: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:203: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:208: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:209: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:210-211: Lost braces in \itemize; meant \describe ? checkRd: (-1) validation.Rd:212-214: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'CDM.Rd': \examples lines wider than 100 characters: example.CDM.obj <- CDM(example.data$dat, example.Q, model = "GDINA", method = "EM", maxitr = 2000, verbose = 1) example.CDM.obj <- CDM(example.data$dat, example.Q, model = "GDINA", method = "BM", maxitr = 1000, verbose = 2) example.CDM.obj <- CDM(example.data$dat, example.Q, model = "ACDM", method = "EM", maxitr = 2000, verbose = 1) Rd file 'validation.Rd': \examples lines wider than 100 characters: Q.GDI.obj <- validation(example.data$dat, example.MQ, method = "GDI", iter.level = "item", maxitr = 150) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [23s/23s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed validation 13.635 0.127 13.764 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [15s/15s] OK Running ‘builde_manul.R’ [0s/0s] Running ‘demo.R’ [15s/15s] * checking PDF version of manual ... [4s/4s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character ^^B (U+0002) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character χ (U+03C7) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘Qval-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 8 NOTEs