* using log directory 'd:/RCompile/CRANincoming/R-devel/QurvE.Rcheck' * using R Under development (unstable) (2023-07-02 r84627 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'QurvE/DESCRIPTION' ... OK * this is package 'QurvE' version '1.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Nicolas T. Wirth ' Possibly misspelled words in DESCRIPTION: Wirth (42:15) al (42:24) et (42:21) Size of tarball: 5215197 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'QurvE' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [45s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [33s] ERROR Running examples in 'QurvE-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot.flBootSpline > ### Title: Generic plot function for 'flBootSpline' objects. > ### Aliases: plot.flBootSpline > > ### ** Examples > > # load example dataset > input <- read_data(data.growth = system.file("lac_promoters.xlsx", package = "QurvE"), + data.fl = system.file("lac_promoters.xlsx", package = "QurvE"), + sheet.growth = 1, + sheet.fl = 2 ) Sample data are stored in columns. If they are stored in row format, please run read_data() with data.format = 'row'. > > # Extract time and normalized fluorescence data for single sample > time <- input$time[4,] > data <- input$norm.fluorescence[4,-(1:3)] # Remove identifier columns > > # Perform linear fit > TestFit <- flBootSpline(time = time, + fl_data = data, + ID = "TestFit", + control = fl.control(fit.opt = "s", x_type = "time", + nboot.fl = 50)) > > plot(TestFit, combine = TRUE, lwd = 0.5) > > > > base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv") > base::cat("plot.flBootSpline", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t") > cleanEx() * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [14s] OK * DONE Status: 1 ERROR, 1 NOTE