* using log directory 'd:/RCompile/CRANincoming/R-devel/QAEnsemble.Rcheck'
* using R Under development (unstable) (2024-12-10 r87437 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'QAEnsemble/DESCRIPTION' ... OK
* this is package 'QAEnsemble' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Weston Roda <wroda@ihe.ca>'

New submission

Possibly misspelled words in DESCRIPTION:
  HPD (18:71)
  Hogg (13:21)
  MCMC (2:48, 6:12, 18:14, 21:24)
  Mackey (13:13)
  Militzer (9:5, 16:19)
  Shao (18:39)
  Weare (11:17)

The Title field should be in title case. Current version is:
  'Ensemble Quadratic and Affine Invariant MCMC algorithms'
In title case that is:
  'Ensemble Quadratic and Affine Invariant MCMC Algorithms'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'QAEnsemble' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ensemblealg: no visible global function definition for 'runif'
psrfdiagnostic: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile runif
Consider adding
  importFrom("stats", "quantile", "runif")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'ensemblealg.Rd':
  \examples lines wider than 100 characters:
      logp_val = dunif(a_shape_use, min = 1e-2, max = 1e2, log = TRUE) + dunif(sigma_scale_use, min = 1, max = 1e4, log = TRUE)
     Weibull_Quad_result = ensemblealg(theta0, logfuns, T_iter = num_chain_iterations, Thin_val = thin_val_par)

Rd file 'psrfdiagnostic.Rd':
  \examples lines wider than 100 characters:
         my_samples_example[,j,i] = solve(matrix(c(1, 0.75, 0.75, 1), nrow = 2, ncol = 2))%*%rnorm(2, mean = 0, sd = 1) + matrix(c(1, 2), nr ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [27m] OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... OK
* DONE
Status: 3 NOTEs