R Under development (unstable) (2025-01-07 r87537 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> require(testthat)
Loading required package: testthat
> require(PvSTATEM)
Loading required package: PvSTATEM
> 
> test_check("PvSTATEM")
Creating the output directory: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output'
(WARNING)
Using less than five samples to fit the logistic model. For now, using the basic nplr method to fit the logistic model - should be modified in the futureInstance of the Model class fitted for analyte ' Spike_6P_IPP ': 
 - fitted with 2 parameters
 - using 2 samples
 - using log residuals (mfi):  TRUE 
 - using log dilution:  TRUE 
 - top asymptote: 100 
 - bottom asymptote: 50 
 - goodness of fit: 1 
 - weighted goodness of fit: 1 
[1] "Parsing fileD:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/external/Chul_IgG3_1.csv"
[1] "Parsing successful"
[1] "Parsing fileD:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/external/Chul_TotalIgG_2.csv"
[1] "Parsing successful"
[1] "Parsing fileD:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/external/New_Batch_14_20140513_082522.csv"
[1] "Parsing successful"
[1] "Parsing fileD:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/external/New_Batch_6_20160309_174224.csv"
[1] "Parsing successful"
[1] "Parsing fileD:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/external/pone.0187901.s001.csv"
[1] "Parsing successful"
Reading Luminex data from: D:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/CovidOISExPONTENT_CO.csv
using format xPONENT

New plate object has been created with name: CovidOISExPONTENT_CO!

Reading Luminex data from: D:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/CovidOISExPONTENT_CO.csv
using format xPONENT

New plate object has been created with name: CovidOISExPONTENT_CO!

Reading Luminex data from: D:/RCompile/CRANincoming/R-devel/lib/PvSTATEM/extdata/CovidOISExPONTENT_CO.csv
using format xPONENT

New plate object has been created with name: CovidOISExPONTENT_CO!

Fitting the models and predicting RAU for each analyte
Adding the raw MFI values to the output dataframe
Saving the computed RAU values to a CSV file located in: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output.csv'
Fitting the models and predicting RAU for each analyte
Adding the raw MFI values to the output dataframe
Saving the computed RAU values to a CSV file located in: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output.csv'
Fitting the models and predicting RAU for each analyte
Computing nMFI values for each analyte
Adding the raw MFI values to the output dataframe
Saving the computed nMFI values to a CSV file located in: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output.csv'
Computing nMFI values for each analyte
Adding the raw MFI values to the output dataframe
Saving the computed nMFI values to a CSV file located in: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output.csv'
Computing nMFI values for each analyte
Computing nMFI values for each analyte
Computing nMFI values for each analyte
Computing nMFI values for each analyte
Saving the computed nMFI values to a CSV file located in: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output.csv'
Computing nMFI values for each analyte
Adding the raw MFI values to the output dataframe
Saving the computed nMFI values to a CSV file located in: 'D:/temp/2025_01_08_20_30_17_28768/RtmpItESdr/output.csv'
[ FAIL 0 | WARN 1 | SKIP 9 | PASS 183 ]

══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• empty test (9): 'test-get-nmfi.R:3:1', 'test-integration.R:55:1',
  'test-plots_mfi.R:27:1', 'test-plots_plate.R:38:1',
  'test-plots_plate.R:57:1', 'test-process-plate.R:70:1',
  'test-standard_curve.R:27:1', 'test-standard_curve.R:32:1',
  'test-standard_curve.R:37:1'

[ FAIL 0 | WARN 1 | SKIP 9 | PASS 183 ]
> 
> proc.time()
   user  system elapsed 
  29.06    3.06   37.26