assay <- get_assays( identifier = c("1234", "7815"), namespace = "aid" ) testRequest(assay) test_that("pulling assays via an unknown 'namespace'", { tmp <- get_assays( identifier = c("2244", "1234"), namespace = "cid" ) expect_false(allSuccess(tmp)) }) test_that("get_assay() returns an object of class 'PubChemInstanceList'", { expect_true("PubChemInstanceList" %in% class(assay)) }) # instance() tests. test_that("instance() returns an object of class 'PubChemInstance'", { expect_true("PubChemInstance" %in% class(instance(assay))) expect_output(print(instance(assay)), "An object of class 'PubChemInstance'") }) test_that("retrieve() returns selected slots as expected for an assay", { expect_identical( retrieve(assay, .slot = "aid", .which = "1234", .to.data.frame = TRUE), retrieve(instance(assay, "1234"), .slot = "aid", .to.data.frame = TRUE) ) expect_identical( retrieve(assay, .slot = "aid", .which = "1234", .to.data.frame = FALSE), retrieve(instance(assay, "1234"), .slot = "aid", .to.data.frame = FALSE) ) # Return results invisibly when .verbose = TRUE expect_invisible( retrieve(assay, .slot = "aid", .to.data.frame = FALSE, .combine.all = TRUE, .verbose = TRUE) ) # Combine all assays into a data.frame expect_true({ tmp <- retrieve(assay, .slot = "aid", .to.data.frame = TRUE, .combine.all = TRUE, .verbose = FALSE) all(request_args(assay, "identifier") %in% tmp[["Identifier"]]) }) }) test_that("retrieve() returns error when unknown/undefined slots or identifiers are provided.", { expect_error(retrieve(assay, .which = "dncr")) expect_warning(retrieve(assay, .which = "1234")) expect_true({ tmp <- suppressWarnings(retrieve(assay, .which = "1234")) is.null(tmp) }) expect_null(retrieve(assay, .which = "1234", .slot = "unkown_slot")) }) test_that("checking the effect of '.verbose' argument in retrieve() function", { expect_output(retrieve(assay, .slot = "comment", .verbose = TRUE)) expect_invisible(retrieve(assay, .slot = "comment", .verbose = TRUE, .combine.all = TRUE)) })