* using log directory ‘/srv/hornik/tmp/CRAN/ProbBreed.Rcheck’
* using R Under development (unstable) (2024-07-15 r86902)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1+b1)
    Debian flang-new version 18.1.8 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘ProbBreed/DESCRIPTION’ ... OK
* this is package ‘ProbBreed’ version ‘1.0.4.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] NOTE
Maintainer: ‘Saulo Chaves <saulo.chaves@ufv.br>’

Found the following (possibly) invalid URLs:
  URL: https://cran.rstudio.com/web/packages/ProbBreed/index.html
    From: README.md
    Status: 200
    Message: OK
    CRAN URL not in canonical form
Canonical CRAN.R-project.org URLs use https.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ProbBreed’ can be installed ... [12s/12s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/1s] OK
* checking whether the package can be unloaded cleanly ... [2s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/1s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
print:
  function(x, ...)
print.probsup:
  function(obj, ...)

print:
  function(x, ...)
print.extr:
  function(obj, ...)

plot:
  function(x, ...)
plot.extr:
  function(obj, category, ...)

plot:
  function(x, ...)
plot.probsup:
  function(obj, category, level, ...)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/11s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.extr.Rd: ggplot2
  plot.probsup.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [57s/57s] ERROR
Running examples in ‘ProbBreed-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bayes_met
> ### Title: Bayesian model for multi-environment trials
> ### Aliases: bayes_met
> 
> ### ** Examples
> 
> mod = bayes_met(data = soy,
+                 gen = "Gen",
+                 loc = "Loc",
+                 repl = NULL,
+                 year = NULL,
+                 reg = NULL,
+                 res.het = TRUE,
+                 trait = 'Y',
+                 iter = 6000, cores = 4, chains = 4)
Error in .check_ncores(cores) : 4 simultaneous processes spawned
Calls: bayes_met ... <Anonymous> -> .local -> <Anonymous> -> .check_ncores
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs