* using log directory ‘/srv/hornik/tmp/CRAN/PoweREST.Rcheck’ * using R Under development (unstable) (2024-08-26 r87056) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘PoweREST/DESCRIPTION’ ... OK * this is package ‘PoweREST’ version ‘0.0.0.9000’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Lan Shui ’ New submission Version contains large components (0.0.0.9000) Possibly misspelled words in DESCRIPTION: DEGs (11:145) Transcriptomics (3:9) transcriptomics (11:82) visium (11:67) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘PoweREST’ can be installed ... [10s/10s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/3s] OK * checking whether the package can be loaded with stated dependencies ... [3s/3s] OK * checking whether the package can be unloaded cleanly ... [3s/3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK * checking whether the namespace can be unloaded cleanly ... [3s/3s] OK * checking loading without being on the library search path ... [3s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/14s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [6s/6s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/4s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] NOTE Found the following HTML validation problems: PoweREST.html:44:6 (PoweREST.Rd:11): Warning: isn't allowed in elements PoweREST.html:44:82 (PoweREST.Rd:11): Warning: inserting implicit

PoweREST.html:44:6 (PoweREST.Rd:11): Warning: lacks "rel" attribute PoweREST.html:44:82 (PoweREST.Rd:11): Warning: trimming empty

PoweREST.html:44:6 (PoweREST.Rd:11): Warning: proprietary attribute "ref" PoweREST_gene.html:43:6 (PoweREST_gene.Rd:11): Warning: isn't allowed in elements PoweREST_gene.html:43:82 (PoweREST_gene.Rd:11): Warning: inserting implicit

PoweREST_gene.html:43:6 (PoweREST_gene.Rd:11): Warning: lacks "rel" attribute PoweREST_gene.html:43:82 (PoweREST_gene.Rd:11): Warning: trimming empty

PoweREST_gene.html:43:6 (PoweREST_gene.Rd:11): Warning: proprietary attribute "ref" PoweREST_subset.html:30:1 (PoweREST_subset.Rd:46): Warning: inserting implicit

PoweREST_subset.html:46:6 (PoweREST_subset.Rd:12): Warning: isn't allowed in elements PoweREST_subset.html:46:82 (PoweREST_subset.Rd:12): Warning: inserting implicit

PoweREST_subset.html:46:6 (PoweREST_subset.Rd:12): Warning: lacks "rel" attribute PoweREST_subset.html:26:47 (PoweREST_subset.Rd:43): Warning: lacks "rel" attribute PoweREST_subset.html:30:1 (PoweREST_subset.Rd:46): Warning: trimming empty

PoweREST_subset.html:46:82 (PoweREST_subset.Rd:12): Warning: trimming empty

PoweREST_subset.html:46:6 (PoweREST_subset.Rd:12): Warning: proprietary attribute "ref" PoweREST_subset.html:26:47 (PoweREST_subset.Rd:43): Warning: proprietary attribute "ref" fit_XGBoost.html:78:1 (fit_XGBoost.Rd:29): Warning: inserting implicit

fit_XGBoost.html:78:1 (fit_XGBoost.Rd:29): Warning: trimming empty

fit_powerest.html:28:1 (fit_powerest.Rd:27): Warning: inserting implicit

fit_powerest.html:63:1 (fit_powerest.Rd:20): Warning: inserting implicit

fit_powerest.html:28:1 (fit_powerest.Rd:27): Warning: trimming empty

fit_powerest.html:63:1 (fit_powerest.Rd:20): Warning: trimming empty

pred_powerest.html:26:1 (pred_powerest.Rd:24): Warning: inserting implicit

pred_powerest.html:40:6 (pred_powerest.Rd:10): Warning: isn't allowed in elements pred_powerest.html:40:82 (pred_powerest.Rd:10): Warning: inserting implicit

pred_powerest.html:40:6 (pred_powerest.Rd:10): Warning: lacks "rel" attribute pred_powerest.html:23:51 (pred_powerest.Rd:22): Warning: lacks "rel" attribute pred_powerest.html:26:1 (pred_powerest.Rd:24): Warning: trimming empty

pred_powerest.html:40:82 (pred_powerest.Rd:10): Warning: trimming empty

pred_powerest.html:40:6 (pred_powerest.Rd:10): Warning: proprietary attribute "ref" pred_powerest.html:23:51 (pred_powerest.Rd:22): Warning: proprietary attribute "ref" vis_powerest.html:41:6 (vis_powerest.Rd:12): Warning: isn't allowed in elements vis_powerest.html:41:78 (vis_powerest.Rd:12): Warning: inserting implicit

vis_powerest.html:88:1 (vis_powerest.Rd:36): Warning: inserting implicit

vis_powerest.html:41:78 (vis_powerest.Rd:12): Warning: trimming empty

vis_powerest.html:88:1 (vis_powerest.Rd:36): Warning: trimming empty

* checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs