downloading reverse dependencies ... downloading facmodTS_1.0.tar.gz ... ok downloading PCRA_1.2.tar.gz ... ok downloading portsort_0.1.0.tar.gz ... ok installing dependencies ‘GSE’, ‘PCRA’, ‘PortfolioAnalytics’, ‘ROI.plugin.quadprog’, ‘ROI.plugin.symphony’ begin installing package ‘ROI.plugin.symphony’ begin installing package ‘GSE’ begin installing package ‘ROI.plugin.quadprog’ * installing *source* package ‘ROI.plugin.quadprog’ ... ** package ‘ROI.plugin.quadprog’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.quadprog) * installing *source* package ‘ROI.plugin.symphony’ ... ** package ‘ROI.plugin.symphony’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help No man pages found in package ‘ROI.plugin.symphony’ *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.symphony) begin installing package ‘PortfolioAnalytics’ * installing *source* package ‘PortfolioAnalytics’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCf3qwx/R.INSTALL1bb4c2324688dc/PortfolioAnalytics/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PortfolioAnalytics_init.c -o PortfolioAnalytics_init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c residualcokurtosisMF.c -o residualcokurtosisMF.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c residualcokurtosisSF.c -o residualcokurtosisSF.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o PortfolioAnalytics.so PortfolioAnalytics_init.o residualcokurtosisMF.o residualcokurtosisSF.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCf3qwx/R.INSTALL1bb4c2324688dc/PortfolioAnalytics/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PortfolioAnalytics/00new/PortfolioAnalytics/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PortfolioAnalytics) begin installing package ‘PCRA’ * installing *source* package ‘PCRA’ ... ** package ‘PCRA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PCRA) * installing *source* package ‘GSE’ ... ** package ‘GSE’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpC7tqc4/R.INSTALL1bb45722e4c571/GSE/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c cov-em.cpp -o cov-em.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c emve.cpp -o emve.o emve.cpp: In function ‘arma::cube emve_resamp(arma::mat, arma::umat, arma::vec, int, int, arma::vec, arma::mat, int, arma::uvec, arma::umat, arma::uvec, arma::umat, arma::umat, arma::uvec, int, int, int, arma::uvec, arma::vec, arma::vec, int)’: emve.cpp:193:20: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 193 | if( rk == p){ | ~~~^~~~ emve.cpp:216:24: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 216 | if( rk == p){ | ~~~^~~~ emve.cpp:153:16: warning: variable ‘max_cand_scale’ set but not used [-Wunused-but-set-variable] 153 | double max_cand_scale; | ^~~~~~~~~~~~~~ emve.cpp:154:16: warning: variable ‘min_cand_scale’ set but not used [-Wunused-but-set-variable] 154 | double min_cand_scale; | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gse-rocke.cpp -o gse-rocke.o gse-rocke.cpp: In function ‘SEXPREC* GSE_Rocke(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: gse-rocke.cpp:46:13: warning: unused variable ‘print_step’ [-Wunused-variable] 46 | int print_step = as(Print_step); | ^~~~~~~~~~ gse-rocke.cpp:131:13: warning: unused variable ‘ximp_update’ [-Wunused-variable] 131 | int ximp_update = update(x, Omega, Sigma0, false, mu0, stilde0, miss_group_unique, miss_group_counts, tuning_const_group, gamma_tune_group, wgts_mem, wgtsp_mem, ximp_mem); | ^~~~~~~~~~~ gse-rocke.cpp: In function ‘arma::mat iterS(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, arma::vec, double*, double*, double*, int*)’: gse-rocke.cpp:263:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 263 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix | ~~~^~~ gse-rocke.cpp:162:13: warning: variable ‘error_code’ set but not used [-Wunused-but-set-variable] 162 | int error_code = *error_code_mem; // 0 = no error, 1 = non-positive scale, 2 = non-positive definite est scatter | ^~~~~~~~~~ gse-rocke.cpp: In function ‘arma::mat gradient(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, arma::umat, arma::uvec, arma::vec, arma::vec, double, int, double)’: gse-rocke.cpp:295:13: warning: unused variable ‘n’ [-Wunused-variable] 295 | int n = x.n_rows; | ^ gse-rocke.cpp: In function ‘int update(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, arma::vec, double*, double*, double*)’: gse-rocke.cpp:426:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 426 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix | ~~~^~~ gse-rocke.cpp:416:40: warning: unused variable ‘weight2’ [-Wunused-variable] 416 | double weight2 = weight1 * (md / ppi); | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gse.cpp -o gse.o gse.cpp: In function ‘SEXPREC* GSE_Rcpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: gse.cpp:41:9: warning: unused variable ‘print_step’ [-Wunused-variable] 41 | int print_step = as(Print_step); | ^~~~~~~~~~ gse.cpp:102:9: warning: unused variable ‘ximp_update’ [-Wunused-variable] 102 | int ximp_update = update(x, Omega, Sigma0, false, mu0, stilde0, miss_group_unique, miss_group_counts, tuning_const_group, wgts_mem, wgtsp_mem, ximp_mem); | ^~~~~~~~~~~ gse.cpp: In function ‘arma::mat iterS(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, double*, double*, double*, int*)’: gse.cpp:233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 233 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix | ~~~^~~ gse.cpp:132:9: warning: variable ‘error_code’ set but not used [-Wunused-but-set-variable] 132 | int error_code = *error_code_mem; // 0 = no error, 1 = non-positive scale, 2 = non-positive definite est scatter | ^~~~~~~~~~ gse.cpp: In function ‘int update(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, double*, double*, double*)’: gse.cpp:347:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 347 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix | ~~~^~~ gse.cpp:337:24: warning: unused variable ‘weight2’ [-Wunused-variable] 337 | double weight2 = weight1 * (md / ppi); | ^~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o GSE.so cov-em.o emve.o gse-rocke.o gse.o init.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpC7tqc4/R.INSTALL1bb45722e4c571/GSE/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GSE/00new/GSE/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSE) checking PortfolioAnalytics_2.1.0.tar.gz ... checking facmodTS_1.0.tar.gz ... checking PCRA_1.2.tar.gz ... checking portsort_0.1.0.tar.gz ... Depends: Package: PortfolioAnalytics Depends: R (>= 4.0.0), zoo, xts (>= 0.10-1), foreach, PerformanceAnalytics (>= 1.5.1) Imports: methods, GenSA, ROI.plugin.symphony, mco, pso Timings: user system elapsed PortfolioAnalytics 147.782 7.71 157.304 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 2 Check results summary: PortfolioAnalytics ... OK rdepends_facmodTS ... OK rdepends_PCRA ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_portsort ... OK