* using log directory 'd:/RCompile/CRANincoming/R-devel/PointedSDMs.Rcheck' * using R Under development (unstable) (2024-07-07 r86880 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'PointedSDMs/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'PointedSDMs' version '2.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [37s] NOTE Maintainer: 'Philip Mostert ' Suggests or Enhances not in mainstream repositories: INLA Availability using Additional_repositories specification: INLA yes https://inla.r-inla-download.org/R/testing Found the following (possibly) invalid URLs: URL: http://www.pabirdatlas.psu.edu From: man/BBA.Rd Status: Error Message: Could not resolve host: www.pabirdatlas.psu.edu URL: http://www.pabirdatlas.psu.edu/ From: inst/doc/Setophaga.html Status: Error Message: Could not resolve host: www.pabirdatlas.psu.edu URL: https://zenodo.org/badge/latestdoi/368823136 From: README.md Status: 502 Message: Bad Gateway * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PointedSDMs' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [48s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [133s] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed specifySpecies 27.64 3.45 31.08 specifyISDM 22.55 4.35 26.86 specifyMarks 16.80 4.45 21.17 startSpecies 11.40 2.08 13.47 intModel 10.16 2.61 12.77 startISDM 8.18 1.99 10.13 * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [16s] OK * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [11s] OK * DONE Status: 2 NOTEs