* using log directory 'd:/RCompile/CRANincoming/R-devel/Platypus.Rcheck'
* using R Under development (unstable) (2024-10-16 r87241 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'Platypus/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Platypus' version '3.6.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [15s] NOTE
Maintainer: 'Alexander Yermanos <daphne.v.ginneken@gmail.com>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Cotet (4:586)
  Yermanos (4:533)
  al (4:545, 4:595)
  et (4:542, 4:592)
  immunogenomics (4:512)
  scSeq (4:174)
  transcriptional (4:318)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-05-14 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Platypus' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [61s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'GEX_cluster_genes.Rd':
  \examples lines wider than 100 characters:
     try({GEX_cluster_genes(GEX = subset(Platypus::small_vgm[[2]], seurat_clusters %in% c(0,1)), min.pct = .25

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [71s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [24s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 2 NOTEs