* using log directory ‘/srv/hornik/tmp/CRAN_pretest/Plantbreeding.Rcheck’
* using R Under development (unstable) (2024-12-01 r87412)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘Plantbreeding/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Plantbreeding’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Prity Kumari <psingh2506@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  AMMI (9:65)
  Eberhart (8:68)
  PCV (7:72)
  heritability (7:77)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prity",
                    family = "Kumari",
                    role = c("aut", "cre"),
                    email = "psingh2506@gmail.com")
as necessary.

The Title field should be in title case. Current version is:
  ‘Stability analysis in Plant Breeding’
In title case that is:
  ‘Stability Analysis in Plant Breeding’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘Plantbreeding’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
  MIT
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘globals.R’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  ‘agricolae’ ‘dplyr’ ‘ggplot2’
'library' or 'require' calls in package code:
  ‘agricolae’ ‘dplyr’ ‘ggplot2’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] NOTE
ammi_analysis: no visible binding for global variable ‘ENV’
ammi_analysis: no visible binding for global variable ‘mean_Y’
ammi_analysis: no visible binding for global variable ‘GEN’
ammi_analysis: no visible binding for global variable ‘PC1’
ammi_analysis: no visible binding for global variable ‘PC2’
ammi_analysis: no visible binding for global variable ‘type’
ammi_analysis: no visible binding for global variable ‘PC’
ammi_analysis: no visible binding for global variable ‘Variance’
breeding_metrics: no visible global function definition for
  ‘as.formula’
breeding_metrics: no visible global function definition for ‘aov’
gxe_analysis: no visible global function definition for ‘as.formula’
gxe_analysis: no visible global function definition for ‘aov’
stability_analysis: no visible global function definition for ‘%>%’
stability_analysis: no visible binding for global variable ‘Genotype’
stability_analysis: no visible binding for global variable ‘Trait’
stability_analysis: no visible global function definition for ‘sd’
stability_analysis: no visible binding for global variable
  ‘Environment’
stability_analysis: no visible binding for global variable ‘EnvMean’
stability_analysis: no visible global function definition for ‘do’
stability_analysis: no visible global function definition for ‘lm’
stability_analysis: no visible binding for global variable ‘.’
stability_analysis: no visible global function definition for ‘coef’
stability_analysis: no visible global function definition for
  ‘residuals’
Undefined global functions or variables:
  %>% . ENV EnvMean Environment GEN Genotype PC PC1 PC2 Trait Variance
  aov as.formula coef do lm mean_Y residuals sd type
Consider adding
  importFrom("stats", "aov", "as.formula", "coef", "lm", "residuals",
             "sd")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 4 NOTEs