downloading reverse dependencies ‘CodelistGenerator’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘CohortSymmetry’, ‘DrugUtilisation’, ‘IncidencePrevalence’, ‘MeasurementDiagnostics’, ‘OmopConstructor’, ‘OmopSketch’, ‘omock’, ‘OmopViewer’, ‘PhenotypeR’, ‘visOmopResults’ trying URL 'file:///data/Repositories/CRAN/src/contrib/CodelistGenerator_4.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortCharacteristics_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortConstructor_0.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortSurvival_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortSymmetry_0.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DrugUtilisation_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/IncidencePrevalence_1.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MeasurementDiagnostics_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopConstructor_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopSketch_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/omock_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopViewer_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PhenotypeR_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/visOmopResults_1.4.0.tar.gz' installing dependencies ‘CirceR’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘cpp11’, ‘DrugUtilisation’, ‘IncidencePrevalence’, ‘MeasurementDiagnostics’, ‘OmopSketch’, ‘OmopViewer’, ‘PatientProfiles’, ‘qs2’, ‘reactablefmtr’, ‘shiny.fluent’, ‘shinyTree’ also installing the dependency ‘shiny.react’ begin installing package ‘shiny.react’ begin installing package ‘CirceR’ begin installing package ‘cpp11’ begin installing package ‘shinyTree’ begin installing package ‘reactablefmtr’ begin installing package ‘qs2’ * installing *source* package ‘cpp11’ ... ** this is package ‘cpp11’ version ‘0.5.3’ ** package ‘cpp11’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11) begin installing package ‘OmopViewer’ begin installing package ‘PatientProfiles’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) begin installing package ‘shiny.fluent’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘shiny.fluent’ ... ** this is package ‘shiny.fluent’ version ‘0.4.0’ ** package ‘shiny.fluent’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.fluent) * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘OmopViewer’ ... ** this is package ‘OmopViewer’ version ‘0.6.0’ ** package ‘OmopViewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopViewer) * installing *source* package ‘PatientProfiles’ ... ** this is package ‘PatientProfiles’ version ‘1.4.5’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PatientProfiles) begin installing package ‘CohortConstructor’ begin installing package ‘DrugUtilisation’ begin installing package ‘CohortCharacteristics’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortSurvival’ * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.1.0’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.1.0’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.1’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.5’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.6.1’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ begin installing package ‘MeasurementDiagnostics’ * installing *source* package ‘MeasurementDiagnostics’ ... ** this is package ‘MeasurementDiagnostics’ version ‘0.2.0’ ** package ‘MeasurementDiagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MeasurementDiagnostics) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘1.0.0’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘qs2’ ... ** this is package ‘qs2’ version ‘0.1.7’ ** package ‘qs2’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed C++ compiler: g++-15 -std=gnu++17 zstd 1.5.7 library detected -- skipping zstd compilation Fixed blocksize Checking if atomic link works without -latomic TBB use determined by RcppParallel configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBAo1H2/R.INSTALL94fb774c98f22/qs2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -DIS_UTF8_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stringfish/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -DIS_UTF8_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stringfish/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qx_functions.cpp -o qx_functions.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/concurrent_unordered_set.h:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel/TBB.h:11, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel.h:24, from qx_functions.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here 251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(long unsigned int)’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o qs2.so RcppExports.o qx_functions.o -L. -lzstd -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBAo1H2/R.INSTALL94fb774c98f22/qs2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-qs2/00new/qs2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qs2) checking PatientProfiles_1.4.5.tar.gz ... checking CodelistGenerator_4.0.2.tar.gz ... checking CohortCharacteristics_1.1.0.tar.gz ... checking CohortConstructor_0.6.1.tar.gz ... checking CohortSurvival_1.1.0.tar.gz ... checking CohortSymmetry_0.2.4.tar.gz ... checking DrugUtilisation_1.0.5.tar.gz ... checking IncidencePrevalence_1.2.1.tar.gz ... checking MeasurementDiagnostics_0.2.0.tar.gz ... checking OmopConstructor_0.1.0.tar.gz ... checking OmopSketch_1.0.0.tar.gz ... checking omock_0.6.0.tar.gz ... checking OmopViewer_0.6.0.tar.gz ... checking PhenotypeR_0.3.0.tar.gz ... checking visOmopResults_1.4.0.tar.gz ... Depends: Package: PatientProfiles Depends: R (>= 4.1.0) Imports: cli, clock, dplyr, lifecycle, omopgenerics (>= 1.3.1), purrr, rlang, stringr, tidyr Timings: user system elapsed PatientProfiles 497.3 15.221 439.295 Results: Check status summary: OK Source packages 1 Reverse depends 14 Check results summary: PatientProfiles ... OK rdepends_CodelistGenerator ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_CohortSurvival ... OK rdepends_CohortSymmetry ... OK rdepends_DrugUtilisation ... OK rdepends_IncidencePrevalence ... OK rdepends_MeasurementDiagnostics ... OK rdepends_omock ... OK rdepends_OmopConstructor ... OK rdepends_OmopSketch ... OK rdepends_OmopViewer ... OK rdepends_PhenotypeR ... OK rdepends_visOmopResults ... OK